Lhir025908.3
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387375.1:1483910-1494828[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.22 18 6.7 0.1 1 23 228 251 228 251 0.90 2 10 2.5e-05 0.002 19.1 0.6 1 23 257 279 257 279 0.98 3 10 0.0011 0.089 13.9 2.0 1 23 342 364 342 364 0.96 4 10 0.041 3.3 9.0 0.3 3 22 376 395 375 399 0.87 5 10 0.00018 0.015 16.4 0.4 1 23 436 458 436 458 0.98 6 10 0.016 1.3 10.3 0.4 3 22 468 487 466 491 0.88 7 10 4.1e-05 0.0033 18.4 0.1 1 23 499 522 499 522 0.92 8 10 8 6.4e+02 1.8 5.0 1 23 528 552 528 552 0.91 9 10 9.3e-05 0.0075 17.3 2.9 3 23 561 582 559 582 0.89 10 10 0.012 0.93 10.7 5.7 1 23 588 611 588 611 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGATATAAATGATTTGTGCTGCGGTTGTCTCAGCAAAGGCCGGAAAATGAGACTTATAAACAACTACTTTTCAGAAGAAGAAATTTTCAGTTTTTTCCATGAAATCCCGATACAAATGGATGCATTTCCTCTCTGGTTCTGCTGGGAATGCAAAGCCCGTATCTCCAGTTTCGTAAAATTCAAAGTGCAGACCAAAAATTGTTGGATCGTCCTTCAGAATTATGTTCAAGGGTTTAAAAGACATTTTGAGTCACTATCAAAACTAACCAGTTCCACTCAAGCATGCTTCGATACAAACATGGTGCAAACACAAATTGCTGGTGACAAAATGATCAAAATCAATGATGATGTGGAAACAATCCCAACCGATGATGTCAAAATAAATGAAACTCCTGATGATAAAAGAAATCATCAAAACAATTATGCTCATGTAAAAATGAACCTTAGTGATCCCATCATAGAATTCATTGTTAAAGAAGAGGATTATTCTGATGAAGATAGAACTCTTGTAGATATACAAAATGATAAAAAGGTGAAGAAACATGTTAAAAAAGAGAAAAAAGTAAAGAAAAGGAATAAGAAAGCCATGTTTGAAGAGATAACTTTAAGCAAAGATGAGATATTAGAAGACAGGGCTAGTATGGCATCAAAAGAAGAATATTTGAATGCAATGTTCAAATGCGAGAAATGTATCATACCATACGCAAACGAAGATGATTTAAAAGACCATGAGATTGCCAAACATTCATTAGTGTCGAAACATACATGTGAGTACTGTAGACGGGCGTTCCCAAGTAGCGGCGCGTTGTCGGCGCACTGGCGACGGCACGCGACGCGGTGGCAGTGCGTGACCTGCCGCCACCGCTCCACCGGCGGCGCCGCTGCTGCTCACCACTACACCACCGTACACACTCCCGGTGAAATATATGAGTTGGCAGCAAAAGCTTTCGGTACTCACGATGGAAAAACACATGACATTGGAGAAAATAATTCTAGTGCGGTAACGGGCGGTGCGCACGCGTGCCCTCAGTGCGAGAAGCGGTTCCGGTGGAAGACGTCGCTGCGCAAGCATGCAGAGACACACCGTATCGCGGCGGGGCACTCGCGCCGCCCCTACTGTCAGCCCTGCGCGCTGCCCTTCACCAGCGCCGCCAACCTGCGGAAACACCTCAACACCAGCTCCAAGCACCAGATTATGCTACGGCTCAGAAAATTAAAAGAAGGGAACGCAGACCCCGCCCAACAAGCGAAGGACATAGAAGACATCAAGTGTTCGGTAAACAGTCAAAAGGAGCAGTACCCGTGTCCGCAGTGCGAGAAGAAGTTCCAGTGGAAAGGGAATCTGCTGAGGCATCTACAGAGCCACGCAGCGAGAGCGAACGGCGAGCTTGTGTGTGCCCCCTGCAACCGGACCTTCTCTTCCATAGCGACGTACAAGCAGCACATGAGGATCAGCCGGAAGCACGTCACCGAGGACGACTTCAAGTACGTGTGCAGCGAGTGTGGCAGACGGTTCGCGAACAAGATCGCGCTGCGCGACCACGTCGACTGGGAACATCTCAAACACTACAAGCACGCATGCGCCACCTGCCACAAGCAGGTGTTCAAGAGCCACACGTCGCTGTACCTCCACAGGCAAGTGGTGCACCGCGTGTGTAACGCGGAGCATCTCTGCGACCACTGCGGCAAGTCCTTCCCGAATAAAACAAAACTCCGTAGTCACGTGACGGCGCTGCACACCCGGGACTCCCCCTACAAATGTAGCACGTGCTCCGCTCGGTTCAGTTGGCACTCCTGCCTCTCGCGGCACATGCGCAGAGTGCACGCGGCTAAACCCACCGCGGAACGAACAGAAACATAG
- Protein Sequence
- MEDDINDLCCGCLSKGRKMRLINNYFSEEEIFSFFHEIPIQMDAFPLWFCWECKARISSFVKFKVQTKNCWIVLQNYVQGFKRHFESLSKLTSSTQACFDTNMVQTQIAGDKMIKINDDVETIPTDDVKINETPDDKRNHQNNYAHVKMNLSDPIIEFIVKEEDYSDEDRTLVDIQNDKKVKKHVKKEKKVKKRNKKAMFEEITLSKDEILEDRASMASKEEYLNAMFKCEKCIIPYANEDDLKDHEIAKHSLVSKHTCEYCRRAFPSSGALSAHWRRHATRWQCVTCRHRSTGGAAAAHHYTTVHTPGEIYELAAKAFGTHDGKTHDIGENNSSAVTGGAHACPQCEKRFRWKTSLRKHAETHRIAAGHSRRPYCQPCALPFTSAANLRKHLNTSSKHQIMLRLRKLKEGNADPAQQAKDIEDIKCSVNSQKEQYPCPQCEKKFQWKGNLLRHLQSHAARANGELVCAPCNRTFSSIATYKQHMRISRKHVTEDDFKYVCSECGRRFANKIALRDHVDWEHLKHYKHACATCHKQVFKSHTSLYLHRQVVHRVCNAEHLCDHCGKSFPNKTKLRSHVTALHTRDSPYKCSTCSARFSWHSCLSRHMRRVHAAKPTAERTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -