Lhir001493.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387382.1:5132753-5144213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.2 4.1e+02 2.4 0.1 2 23 109 130 108 130 0.94 2 16 0.00038 0.031 15.4 0.4 2 22 134 154 133 156 0.89 3 16 0.02 1.6 10.0 2.7 3 23 382 403 380 403 0.95 4 16 1.3 1.1e+02 4.2 0.0 3 20 413 430 411 432 0.94 5 16 0.37 30 6.0 0.6 3 23 443 463 442 463 0.95 6 16 4.5 3.6e+02 2.6 0.3 2 23 608 630 607 630 0.82 7 16 0.11 9.2 7.6 1.2 1 23 635 658 635 658 0.96 8 16 3.5e-05 0.0028 18.7 2.8 1 23 664 686 664 686 0.97 9 16 9.8e-06 0.00079 20.4 1.9 1 23 693 715 693 715 0.98 10 16 4.7e-05 0.0038 18.2 2.0 1 23 720 742 720 742 0.96 11 16 0.00012 0.0099 16.9 3.3 1 23 748 770 748 770 0.99 12 16 1.8e-06 0.00014 22.7 1.1 1 23 776 798 776 798 0.97 13 16 0.00022 0.018 16.1 2.9 2 23 805 826 805 826 0.98 14 16 0.00032 0.026 15.6 0.4 2 23 836 858 835 858 0.97 15 16 0.016 1.3 10.3 1.9 2 23 864 885 863 885 0.97 16 16 0.004 0.32 12.2 2.8 1 23 891 914 891 914 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCTGACGATTCTGAAGATGAACCCTTGTCGGTTTTGGCATCACTAAAAAACCGAGAGGAATTTGGACTTGAAATTCTTCCAGTCGTTGAAAAAAACGGGTCTTCAACGAAACTCAACTTAAAGAAAGAATGCGATGTTTCGATAACAATCCAACAGTATTCAAATGAACTGCTACCGGTGGTGGAAAGGCCGCTAGATGTTTGGTTGTATTTGACAGATTTTAATGTAACTGGACCGTATACCTGCCTCCTGTGTTCGGAATGGTTCATAAATAAGAATAGAATTATCATTCACTATGTGATTGATCACAAGAAAGATTACTGTGGAATCTGCAGATACCTAGTACCAAACAGAGAAGCTTGGTGGGATCACCAAAAATTTCATACTCCATGGAAATGTTCACAATGTGAAGCAACCTTTCCGACTCAGTCAGAACTACGAAAACATTTCAGTGATGTTCACAATCTTGTTCACTGTCGCTTCTGCTACCTGCGTCTGCCTGATGATGACCAGTATCAAGTACATCTATTTCAAAAGCATTGCGTCACAAACGTATCAAGTATTGATGCAGAATGTCTATGGGATTTTGAATGTAAAGGAATTCAGAAATTCTTATGCTTACTCTGCTCAAAGTCTGTAGAGGTTGGTCGGCAATTTGCGGATCACTTCATGTCATATCATCATTTCACTCTTAAATGTTTCATGTTTTTTGTTGCCGGTATTGATCTCCCATTTAAAGTAAAAGGTGTTGAATTAACACCACAGTTTATTGATACACAGTTAAAGGCGTACAGCACATTTGGTTATGTTGATTTTATAAAGAGTTTGAAATTTAAAGAAGAATCTGTGATGGTTACAGAGGAAGTGTCCGTAACTGTTGATTGTGAGCCGGAGTTGAAAGGGTTTACTGGAATGAATGAAGACAGTGAAGACTTCAAGCTTAGTGAGGAAATAAAAGGTTACAATGGCATTGAAGACTTTGACATAACACTTATAGAAATTGTTTCTATACAAAAATGCTATTTTGACTATATTAATGAAACATTAAAGAAAATAAGCATGAAAACGATTCCACTCTCATCAGATATAAAATATACTACTGTTACGAATACCATTGTTGAGTCAAAACCAATTAACTGCTGTCTTTGTTCTGAAGGTTTTACAAAAAAGAATATGTTAGAAAGTCATATGTCTAAATTTCATTGTGTAAAAGCCCTGCCAATGTACTGGTGCAGGGTGTGTGCTGCTGTATTTGATAGTTTCTCTGAATTAGAGACACATACTGCACAAGAGTTGGGTGAATTTGACAATCTATGGCTGTGTCAGTTCTGCGATAAAGAATTCGATGGTAGAATAGAGACAAGGAAACATCTGACTGAACACTGGGAAGAAATAGAATATGACAACTGCTTCAGTCCACATTTAGGTTTCAAATGCAAGTTTTGCCCGACTCTGTTTTGGAATGAGACTGATCGAGAGTTGCATCATGTTAAAGTGCATGTTCAAAAGAATAAAAGTGATTTTTATCACTGTACTCTCTGTGGGGATGTTTTCGGGGACAAGGTATTTTTCGACTATCACTTTTTTGAGAAACATGATGGAGATACCCCATATCTTTTAAAATGCTGCATATGCTCCATTGTGGTTGAAAATGTAGAAGTAATGAGGATCCACTTTCAAGAAAATCATTCTGAGGCGACGAAAATATTTTGTTGTATGGATGAGTGCAAATATAGGCCTTTCAGTCAGAAGAAATCATTCCATATGCATTTAAAGTCTTTCCACTACCCAGTGTCCCGGCTCCCTCGTCCTGTCACCTGCGAGACATGCGGCGCTGAATTTGGCAACGCTAAAGCATGCTCACTGCATGCTAACAGAGTCCATGGACCGGGCCGATTCCGCTGTACTCTGTGTGATGAGGTTCTTCACACTAATGATGAAAGAAAGATCCACTACCTCATACGCCATCCGGGTCGTTCTCAATATCAATGCAAGATATGTGATAAGTCCTTCCAGTACAAATCGTCGCTGTACATGCACAAGCAGGAGCATACGCCAAATAAAAAGGATTATACTTGCAACTATTGTGGGAAAAATTTTATGAAAAAAGATTCGTTTCGCGAGCACTTGATGATCCACGAAGCGCCGCGTCACGCGTGCTCGTACTGCCCCATGCGGTTTGTGCAGCGCTCCAACATGATCCGGCATGAGCGCAGGCACACCGGCGAGCGGCCCTACACCTGCCAGTACTGTCCCAGGACGTTCACTGATAAAGGCGCCTGTACCTCACATTTGAGGACCCATCAGAAAACCACATCGTTTGCATGCGTTTACTGCGGACAATCTTTCGTACAGAAATCCAAGCTTACTTATCACATTAGGAAACATACTGGAGAAAATTTGGAGAAATGCACGGTTTGTTCCAAGTTGTTTACGAGCGCGTGCTCGCTTCGGGAACATATGAGGATACATCAGAGGACGAAGTTGAAGAAGACGATCAAGTGTCCACTCTGCAAGAACATGTTCAGCATGGAGCGAGACATGATCCGTCACATGCGCACGGCGCACACCGGCGCGCAGTCCAAGTGCCCCCTGTGCCGCAAGTCTTTCGGCTGCCTCAGCTCGCTGCGGGAACACGTGCTCACGCACAGCCGTGTCAACACTTACCAGTGCAAGCTCTGCCCGAAATCATATCATGTGAAGAAATCAGTAATGAGACATCTGGAGTCCCGTCATAACATAAAACCTCAGGCCGTAGACCCTAAAACACACTACCGACACCTAGACCCAAAGGAATGTGGGCTGGGCTTAGACGATGACGTCATCGAAAGTATCTTCGGTAGACGCAGAAAATCAAGAAACACCAATATTCTTATGGGCGACTTCGCCAATTTCGACAAAGGTCCTCAGCTCAATGAAGCTAATCGAAGGGAAGTAAATATGAGCGAAAAAGGATCTACTGAAATAGAAACAACTGTCCAAATAAAAGTGGAGCCTGATGATGATTATGATGATGACGAAGAAAGTGATGAGATGCCTCCACCTGACTTCGTGAATGTGAAGATTGAAAGTATGGAAGATGACCAATCTGATGCGGAATTACACTGA
- Protein Sequence
- MSSDDSEDEPLSVLASLKNREEFGLEILPVVEKNGSSTKLNLKKECDVSITIQQYSNELLPVVERPLDVWLYLTDFNVTGPYTCLLCSEWFINKNRIIIHYVIDHKKDYCGICRYLVPNREAWWDHQKFHTPWKCSQCEATFPTQSELRKHFSDVHNLVHCRFCYLRLPDDDQYQVHLFQKHCVTNVSSIDAECLWDFECKGIQKFLCLLCSKSVEVGRQFADHFMSYHHFTLKCFMFFVAGIDLPFKVKGVELTPQFIDTQLKAYSTFGYVDFIKSLKFKEESVMVTEEVSVTVDCEPELKGFTGMNEDSEDFKLSEEIKGYNGIEDFDITLIEIVSIQKCYFDYINETLKKISMKTIPLSSDIKYTTVTNTIVESKPINCCLCSEGFTKKNMLESHMSKFHCVKALPMYWCRVCAAVFDSFSELETHTAQELGEFDNLWLCQFCDKEFDGRIETRKHLTEHWEEIEYDNCFSPHLGFKCKFCPTLFWNETDRELHHVKVHVQKNKSDFYHCTLCGDVFGDKVFFDYHFFEKHDGDTPYLLKCCICSIVVENVEVMRIHFQENHSEATKIFCCMDECKYRPFSQKKSFHMHLKSFHYPVSRLPRPVTCETCGAEFGNAKACSLHANRVHGPGRFRCTLCDEVLHTNDERKIHYLIRHPGRSQYQCKICDKSFQYKSSLYMHKQEHTPNKKDYTCNYCGKNFMKKDSFREHLMIHEAPRHACSYCPMRFVQRSNMIRHERRHTGERPYTCQYCPRTFTDKGACTSHLRTHQKTTSFACVYCGQSFVQKSKLTYHIRKHTGENLEKCTVCSKLFTSACSLREHMRIHQRTKLKKTIKCPLCKNMFSMERDMIRHMRTAHTGAQSKCPLCRKSFGCLSSLREHVLTHSRVNTYQCKLCPKSYHVKKSVMRHLESRHNIKPQAVDPKTHYRHLDPKECGLGLDDDVIESIFGRRRKSRNTNILMGDFANFDKGPQLNEANRREVNMSEKGSTEIETTVQIKVEPDDDYDDDEESDEMPPPDFVNVKIESMEDDQSDAELH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -