Lhir022891.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:3392368-3396575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.88 71 4.8 1.1 1 23 81 103 81 103 0.94 2 16 0.42 33 5.8 0.3 2 23 128 150 127 150 0.94 3 16 1 84 4.6 0.1 3 23 174 195 172 195 0.92 4 16 0.013 1 10.6 4.6 1 23 201 223 201 223 0.91 5 16 0.0029 0.23 12.6 1.5 2 23 255 277 254 277 0.97 6 16 2.5e-06 0.0002 22.2 3.9 1 23 283 306 283 306 0.96 7 16 0.00092 0.074 14.2 0.4 3 23 314 334 313 334 0.96 8 16 9.7e-05 0.0078 17.3 1.5 2 23 341 363 340 363 0.96 9 16 0.14 11 7.3 1.4 2 21 493 512 492 515 0.89 10 16 0.071 5.7 8.2 1.1 3 23 539 560 537 560 0.93 11 16 0.0041 0.33 12.1 0.1 1 23 566 589 566 589 0.95 12 16 0.021 1.7 9.9 0.1 2 23 613 635 612 635 0.94 13 16 0.0014 0.11 13.6 0.6 1 23 642 665 642 665 0.95 14 16 0.0069 0.55 11.4 1.5 1 20 671 690 671 693 0.94 15 16 0.0037 0.3 12.3 4.1 1 23 699 721 699 721 0.98 16 16 2.9e-05 0.0024 18.9 3.4 2 23 728 749 727 750 0.94
Sequence Information
- Coding Sequence
- ATGTTTGACGCAGAGTCAAAGTTGACTGTATGGGTGATAAATAAAATAGATAAATATAACAGTATAATAAAAAAGGTACTACAATTGGAACGCAGTCACAGTCCAGATTTACTGACCAAAAGCTCAGAATCTGAAGACGAACCCCAAAAGATTGAGAAAAGGCTGTTGGTAATGAGGGAGAATGTCACCAGAGTGGTGCTCCACTCAACCGTAATGCCTTTCCGATGGCTAGCCACGTGTTACAGATGCTTCTTCTGTTACGATATATTCGAAACGGTCTCCGAACTGAAGTCACATAATTTACTACACGAAAGACAAGAAATCACAAATGTCATGCAGAAATATTGGGAAAACGACGTCTTTGTGGACGTTTCAAAACTTTCCTGTGCAGAATGTTTTGAAAATTGTGAAAGTTTAAATGACCTTGTTAATCATTTGGTAACAGAACATGGTGTCGACTATGATGGCAATACGAAATATTGTTTCAAACCTTTCATCTTGGATGATAATGAGGTCATCTGTGGAATTTGCAATTCTGGCTTCAAGTTATTTAACAACCTTCTCCTTCATGCGACAAAGGAGCATAGAAACCCGAAAGACTATATTTGCAATATCTGCGGAAGGTCTTTCAAGAAACATCAGTATAAGATGCATGTACATAATGAACATAGAAGAAAGACAATCAATTGTACGCAATGCGCCGGAGTCTTCAGTATATATGCTATAAGGACCCACATGATCAAAGCTCATGGTCGCAAAGTCAAATGCAAAATGTGCAGTGAGACTTTCCCGACTTACTACAAAAAGCAGCAACATATGACGACTGTGCACCGAACTCGAAGCGAATTCAGGTGTTCTCACTGCGATAAAGTATTTTATTTTCAGAGTACTTTGAATCGACACATTAAAGAAATGCATTTGAGGGAGAAAAACGCTATGTGTAATGTGTGCGGGTGGACTACGTACATTAGAAGTCAGTTAAAGAGTCACATGGTGAAACACAAAGAAACCAGAGATGTTAAATGCAAATATTGTAATAAGATGTTCAAAGCTGTGAAAAATTTGAAGCAACATTATCAAATAATGCATTTAGAAGAGTTGAATGGAGAAAATAATATAGAATATGACAAAGAAAGGGAAAACAGTGAAATACAAAATGAAAAAGACGAAAATAATTATAATATAGAAATTGAGTACTTGGAAGATGATTTGGATCAGGTCAGGGCATCACCCCGATCGTCAGCTCGAAGAAAGGACAACCTCGTAAGACTTCTCACTGTTATTATAGAAAATTCTACAGTGATGCCGTTCCGGTGGTCCTGCAATAAGTACATGTGTTTCTATTGCTGCTGCCCGTTCCTCAGCAGCATTCAACTGAAGCAGCACAATGCAGAGGAGCACACAGACACAAAAATACGAGGCGCTTTCAGAAGTCTACTTAGAAATAGTAAAATCAAACTGGAGATATCAGAAATGAAATGCACGCTGTGTTTACAACAGTTCACGAAACTCGACCACTTGATAGACCATTTTGAAGATACGCATGACTTTAAAATCGATCATAGCCTGAAAACAGAGTTGTTTTCTTTCAAGTTGTCAGAGGAAAAAATGGCGTGTGAAGACTGCGGCGAAGAGTTCCAGTTTTTCGCCACTTTATTGAAGCATTTTCATTCGTTTCATAACAAAAATGAACCTCACATTTGTGAGATTTGTGGCATGGGCTTCGTAGCTAAAGCTAACGTACAATCCCATGTAAAAAATGTACATTTTAAAGACGTGTCTTGCGACAAATGCGCCAAAAAAGATTGTGAGCATTTAAAAAAGCCTACAGATAAAAAATGTCCGATGTGTTCAGAAATTTTACCTTCTCCTTACATGTATAAACGGCATTTGGCGAATGTTCATGATGTAAAGAGCCACCAGTTCCCGTGCGACTTATGCCCTAAAGTGTTTCCTGTAAGATATCGCCTCGTAAAGCATAAACACATGGTTCACTTAAAGCAAAGAAGCTTCGCTTGTGAGATCTGCGGGTACAGAGCATTTAGCAAGGAATATTTGAGGCGTCACATGGTGTGTCACGATGACGCCAGGCCGTTCGAGTGCGACTTCTGTAAGAAGACCTTCCAAAGGAAGAAGACTCTGGAGTTTCATAGAAGAATACATACAAACGATAAAAGGTGTGTCTGTAAAGTTTGTGGGAAGGCATTTGTACAGACGACCAGCTTGAAGCTTCACTACAGAGTGCATCATCCGAAAGATGGCAGCAAAGACGCTGACTGGACATAA
- Protein Sequence
- MFDAESKLTVWVINKIDKYNSIIKKVLQLERSHSPDLLTKSSESEDEPQKIEKRLLVMRENVTRVVLHSTVMPFRWLATCYRCFFCYDIFETVSELKSHNLLHERQEITNVMQKYWENDVFVDVSKLSCAECFENCESLNDLVNHLVTEHGVDYDGNTKYCFKPFILDDNEVICGICNSGFKLFNNLLLHATKEHRNPKDYICNICGRSFKKHQYKMHVHNEHRRKTINCTQCAGVFSIYAIRTHMIKAHGRKVKCKMCSETFPTYYKKQQHMTTVHRTRSEFRCSHCDKVFYFQSTLNRHIKEMHLREKNAMCNVCGWTTYIRSQLKSHMVKHKETRDVKCKYCNKMFKAVKNLKQHYQIMHLEELNGENNIEYDKERENSEIQNEKDENNYNIEIEYLEDDLDQVRASPRSSARRKDNLVRLLTVIIENSTVMPFRWSCNKYMCFYCCCPFLSSIQLKQHNAEEHTDTKIRGAFRSLLRNSKIKLEISEMKCTLCLQQFTKLDHLIDHFEDTHDFKIDHSLKTELFSFKLSEEKMACEDCGEEFQFFATLLKHFHSFHNKNEPHICEICGMGFVAKANVQSHVKNVHFKDVSCDKCAKKDCEHLKKPTDKKCPMCSEILPSPYMYKRHLANVHDVKSHQFPCDLCPKVFPVRYRLVKHKHMVHLKQRSFACEICGYRAFSKEYLRRHMVCHDDARPFECDFCKKTFQRKKTLEFHRRIHTNDKRCVCKVCGKAFVQTTSLKLHYRVHHPKDGSKDADWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -