Lhir026189.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387375.1:6077901-6090133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0052 0.41 11.8 2.7 1 23 199 221 199 221 0.98 2 12 2.4 2e+02 3.4 0.0 3 23 230 251 229 251 0.93 3 12 0.15 12 7.2 2.8 1 23 255 277 255 277 0.96 4 12 3.7e-05 0.003 18.6 1.6 1 23 282 305 282 305 0.96 5 12 0.082 6.6 8.0 0.2 1 23 308 331 308 331 0.95 6 12 0.0046 0.37 12.0 0.4 1 19 341 359 341 361 0.97 7 12 0.49 39 5.6 1.4 1 23 372 394 372 394 0.96 8 12 0.00036 0.029 15.5 0.3 2 23 402 424 402 424 0.96 9 12 0.00093 0.075 14.2 2.9 2 23 436 457 435 457 0.96 10 12 0.0017 0.13 13.4 5.1 1 23 463 485 463 485 0.96 11 12 2.7e-05 0.0022 19.0 1.9 1 23 491 513 491 513 0.94 12 12 4.5e-05 0.0036 18.3 1.7 1 19 519 537 519 542 0.95
Sequence Information
- Coding Sequence
- ATGAATAAATTTGATACCCCTGTCACATCACAAAATTATGATTCCGTTGTCTCATTACAAAATTTTAATTCTCTTATCACATCACAAAGATTTTCCATTGTAACGGTCAAAGAAGAAAAGTCTCAAATAAAATCTGACAATGATGAATATTATGATTACAGTTTCGATTATAATAATGATGTAGAAAATGTTAATTCTGATTTCAATGATGAAAATTATAAAGATGCCAAACAGAAATGTGACAGCGATGAAGAACCATTAGCAAAAAAAATTAAAAAGAAACAAAAGAAATCCAAAGTTAAATTACACAAACATTCTGTGAATCTAAGTAAATATGATGAAGTTGATGTCAAAACTGAGGATCGTCAGCATTTTTCAATAAATGACCAGAATGTATTAACAAATGATCAGAATTTACCAATACAAAACCTGAATTTACAAGAAAATATTCAATATTTAGAAACAAATCATCTGAATGTTTCAAATCAAGTACAAGATTTGGAAATAGACCATAAGCTGGTAATATTAAGCGAACAAGAGCAGATAGAAGAGGTGTTATCTCGAAAACTGTCAGCAAATTATTTGAATTCAGTACATAAGTGTGAGAGCTGCTTTAAAGGTTTCATGACTGAAGCTACATACAAAAATCACATGGCAAGACATGAACCGTGCGCTGGGCCGGTTGCTTGCCCGGTGTGCGCGACGCGTTGGCCTGACGCACGCGCGCTGCGGGCCCACACGCTCATATCACACGAAAGAAGGTACATATGCAAAGTTTGCGGCCACATTTCTAAATCCAGCCACAAAGCGAAGGAGCATACACAGTGGCACGCCGGCGTGACATTCCCCTGCAACACCTGCGGACGCAGCTTTACTAAAAGCACCAGCTATTTGACACATGTGAGGTTACGCCACGCGACACACGTATGCGCCGCGTGCGGACAGAGCTTCATAGGGGAGAATGGGCTTAGTATGCATAAAAAGAAAGCGCACAGAGATGATCATGGTGAACCGTCACTGTACGAGTGCCACAGCTGCCACGTTCAGTTCCGAAGCGCTGCAGCGCTGCGGCAACACGGCGAGCTCATTGGGGATGGATGCGACGATACACTGCATGTTTGCGTCCAGTGCGGTGACCATTTTGCGAGTGACCAGCTCTTAAAGGAACATAAAGATATGCACCTCAAGACTGATGCGCTCCGCACGTGTTCACAGTGCTCGCGAACGTTTGCGAACGAACGCTCGCTTGCGGCGCACGTGCAACGAGCGCACGCACGCACACACGCACGTTCGCCTCGTCATTGTGTGTGTGAGGTGTGCGGATACAAGTGTATGAGCACCAGTTCTCTGGTGAATCATCAGCGAGTACACTCGGGAGAGAAGCCGCATGCATGCGTACACTGTCACAAGCGATTCAGCGTCGCGCAGCGGCTACAGATCCATGTGCGTACACACACAGGCGAGCGTCCTTTCCAGTGCACGCGGTGTCCTAAGGCGTTCAAACACAAAGCTGCCCTCAACAGGCACGACAGGGTACACACAGGCGTGAAACCGTACTCTTGTCCTCAATGCGGGAAAAGTTTCTCCCAGTCCAACTCGATGAAGCAACACTGCGCAGGAGTACACATGAAGACATACATCTACTCCAGGCGAAGCAAACAATAA
- Protein Sequence
- MNKFDTPVTSQNYDSVVSLQNFNSLITSQRFSIVTVKEEKSQIKSDNDEYYDYSFDYNNDVENVNSDFNDENYKDAKQKCDSDEEPLAKKIKKKQKKSKVKLHKHSVNLSKYDEVDVKTEDRQHFSINDQNVLTNDQNLPIQNLNLQENIQYLETNHLNVSNQVQDLEIDHKLVILSEQEQIEEVLSRKLSANYLNSVHKCESCFKGFMTEATYKNHMARHEPCAGPVACPVCATRWPDARALRAHTLISHERRYICKVCGHISKSSHKAKEHTQWHAGVTFPCNTCGRSFTKSTSYLTHVRLRHATHVCAACGQSFIGENGLSMHKKKAHRDDHGEPSLYECHSCHVQFRSAAALRQHGELIGDGCDDTLHVCVQCGDHFASDQLLKEHKDMHLKTDALRTCSQCSRTFANERSLAAHVQRAHARTHARSPRHCVCEVCGYKCMSTSSLVNHQRVHSGEKPHACVHCHKRFSVAQRLQIHVRTHTGERPFQCTRCPKAFKHKAALNRHDRVHTGVKPYSCPQCGKSFSQSNSMKQHCAGVHMKTYIYSRRSKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -