Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387375.1:6367639-6385617[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.69 56 5.1 5.8 1 23 139 161 139 161 0.97

2 11 0.0033 0.27 12.4 0.8 1 23 168 191 168 191 0.92

3 11 0.026 2.1 9.6 2.5 1 23 195 217 195 217 0.98

4 11 0.00098 0.079 14.1 2.4 1 23 222 245 222 245 0.97

5 11 0.0036 0.29 12.3 1.4 1 23 251 274 251 274 0.95

6 11 4.6 3.7e+02 2.6 0.6 2 13 324 335 323 343 0.72

7 11 0.084 6.8 8.0 0.1 5 23 618 637 617 637 0.94

8 11 9.6e-06 0.00077 20.4 1.4 2 23 647 668 646 668 0.97

9 11 8.6e-06 0.00069 20.6 1.6 1 23 674 698 674 698 0.97

10 11 3.1e-07 2.5e-05 25.1 1.7 1 23 704 726 704 726 0.99

11 11 6.5e-06 0.00052 20.9 1.6 1 23 732 755 732 755 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.69	56	5.1	5.8	1	23	139	161	139	161	0.97
2	11	0.0033	0.27	12.4	0.8	1	23	168	191	168	191	0.92
3	11	0.026	2.1	9.6	2.5	1	23	195	217	195	217	0.98
4	11	0.00098	0.079	14.1	2.4	1	23	222	245	222	245	0.97
5	11	0.0036	0.29	12.3	1.4	1	23	251	274	251	274	0.95
6	11	4.6	3.7e+02	2.6	0.6	2	13	324	335	323	343	0.72
7	11	0.084	6.8	8.0	0.1	5	23	618	637	617	637	0.94
8	11	9.6e-06	0.00077	20.4	1.4	2	23	647	668	646	668	0.97
9	11	8.6e-06	0.00069	20.6	1.6	1	23	674	698	674	698	0.97
10	11	3.1e-07	2.5e-05	25.1	1.7	1	23	704	726	704	726	0.99
11	11	6.5e-06	0.00052	20.9	1.6	1	23	732	755	732	755	0.97

Sequence Information

Coding Sequence: ATGATCAACCATACTCCTGTTCACAATTTTGTAGTAACACCAGTTGACATTTTTAACATAGGGACCGAAATTAAAGAGACAGAAGGAGATATCAAACAGGAGATAGACAGAGATGACGATAGTCAAGAAGCTGAAGAAATGATGTCTCCAGTCACGGAAGTCAAAGTCGAGCTTGAGTCCGGGCACTCGAGCCGCTCAGATACAACGCTCAGCGCTGCGAGCGACTCGGAAGAGGATATGCCCCTTCACACGCTAAAAAACGCGCCGGGGAAGAGGAAAAAACTGGTTGAACAGGATGCCACAGATTATAACGCAGATTCTAAATTGGATTTCCAAGAGGTGATCTTAACCGAAGAACAGCAAAAGGAGGCGATGGCCGCGCGCGCTTTATCTAATAACTATCTTCACGCACCTCACCGATGCACCATGTGCTGCCGAGGTTTTAATAACTTGGAGACGTTCAACAATCATTTGGAAAAACACGTTGAGAGTAATGGACAGTATATTTGTAATATATGCTCGATGCGGTACAAAAGCGAACGTCTGCTAAGGGCACACACACACGCGGCACATGGGAGGCAGTATATATGTAATAAATGCAACGTCGTGTGTAGTACTAGGCACCAGGCGAGTGACCATGCGCGCATCCACTCTGGTGACTTTTACGAGTGCAAGCTGTGCGGGAAAAATTTCCATGCTCGTACATCGTACCTGACGCACATGCGCGCGTCGCACGCGGGCGCCGCGCGACACGTCTGCTCCGCCTGCGGGGAACATTTCATCAGCGCGCACGGGCTGCGCATGCACCAGGCCAGGGCTCACGCGAGGGCCGACAACGTAGAAGAAAAGTCGACCCCACCAGAAGACAGATACTGCGCACCGTGCCAAATACAGTTCCTATGTCGCCGAGCCTGGGTCATACACACGCTCACGACGCCCACACACAAACAGCACGCTTTTGATAATAAAGAATGTCCGATCTGCACGAAGAAGATATCAGACTCGATGAGTAATCATTTAAAGTTCCATGAAGAGGAACTGAAGCGGCCTCGAGACAAGCCTCCAGCCCCCGCGTCCGGGGCTAAACTTGACTGCGACCAGAGTAAACCAAATGTAACAAAACATGAGCAAAATCCTGGGCAATCTAATTGTATAGAACTGGTAGTGAGTCCAGATATAGTCCAGAGGGAGTCACCTAGGAAGCCTTTATTCCTAGAGTCACCCGTGGAAGAATATAACAAATCATATGATGAATTGGGATCAAACGAAAAAGAAATTGCCTTAAAAGTTTATAAGTATGTTAAGGAAAACATTGCCAATCTCTCCGAAGGTGGAATATTTCACAAGGGAGTAATTCTTAAAACTACCGCTGAAATTATGGGCATTTCAGAAATAACAGTTCAAAGAATACTAGGGGAACACAAGACCACTGGAAAAGTGTCCTCCCCAGAGAGATCAAAAGATATTATTGATAAACCTGGACCGTCACATTCTACAAAACAAAACGAGAATCCAGAACCTGATGAGTTTAAGTCGAATACTGATAAAACTAAAAAATATAGAATGACACCATCGAATGAAAAAAGGATCGCCATCAGACTTCACAATCATATTGAAAAGTCGTTTAATGGATATCCCTACAGGGGGATAGTTTTAAAAAAGACCGCCGAGATAATGGGTATATCTGATAAAACTGTAACGAGAGTATTGAATGAATATAGAACTACTGGACAGGTTTCCTCACCTCAAAAGCCTAGAAATACACCCGACTGTATGGATAAATTAGACGACTTCACTATGTCGGAAATTAAAAAAATAGTTCAACAATTTTACGATAGGAGTGAATTACCTACGTGCTCGCTGAGCTTCGCGACGCGCGCCCGTCTGGCGGCGCACGTACGGCGCATGCACCTCGGTCTCAAGTACAACAAAAATTTAGTCTGCGAAGTATGCGGGAAAAAATGTACGTCTGCCGCAACTCTTCGCTATCACCAACGCACCCATACAGGCGAACGCCCGCACACATGCACAGTCCCTGGTTGCGGCAAGCGGTTCACGGACACAAACCAGCTGCGTATACACACACGCACGCACACAGGCGAACGGCCCTACACATGCGAGCATTGCGGAAGACGGTTCGCACAGAAACCCGCACTTAACAGACATTATAGGGTTCACACCGGTGCCAAGCCGTACACTTGCCAGCTATGCACCAAGTCATTCAGTCAGTCCAACTCTCTAAACACGCACGTTAAATCTGTCCACTTGAAGATGAACGCTAAGAAACGGCAGCGAACTGCTGTTGGGAAAACTGAGAACGGCAAGAAGAATCGATGTACTGAAGCTGACGGTCTGCTGACAGCTGACGATAATGACGTTAAGCTAGATAATATAGTTATAGGAATATAG
Protein Sequence: MINHTPVHNFVVTPVDIFNIGTEIKETEGDIKQEIDRDDDSQEAEEMMSPVTEVKVELESGHSSRSDTTLSAASDSEEDMPLHTLKNAPGKRKKLVEQDATDYNADSKLDFQEVILTEEQQKEAMAARALSNNYLHAPHRCTMCCRGFNNLETFNNHLEKHVESNGQYICNICSMRYKSERLLRAHTHAAHGRQYICNKCNVVCSTRHQASDHARIHSGDFYECKLCGKNFHARTSYLTHMRASHAGAARHVCSACGEHFISAHGLRMHQARAHARADNVEEKSTPPEDRYCAPCQIQFLCRRAWVIHTLTTPTHKQHAFDNKECPICTKKISDSMSNHLKFHEEELKRPRDKPPAPASGAKLDCDQSKPNVTKHEQNPGQSNCIELVVSPDIVQRESPRKPLFLESPVEEYNKSYDELGSNEKEIALKVYKYVKENIANLSEGGIFHKGVILKTTAEIMGISEITVQRILGEHKTTGKVSSPERSKDIIDKPGPSHSTKQNENPEPDEFKSNTDKTKKYRMTPSNEKRIAIRLHNHIEKSFNGYPYRGIVLKKTAEIMGISDKTVTRVLNEYRTTGQVSSPQKPRNTPDCMDKLDDFTMSEIKKIVQQFYDRSELPTCSLSFATRARLAAHVRRMHLGLKYNKNLVCEVCGKKCTSAATLRYHQRTHTGERPHTCTVPGCGKRFTDTNQLRIHTRTHTGERPYTCEHCGRRFAQKPALNRHYRVHTGAKPYTCQLCTKSFSQSNSLNTHVKSVHLKMNAKKRQRTAVGKTENGKKNRCTEADGLLTADDNDVKLDNIVIGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -