Lhir022884.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:3352623-3366962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.13 11 7.4 1.4 1 23 270 292 270 292 0.95 2 16 0.54 43 5.5 0.0 5 23 323 342 322 342 0.91 3 16 0.029 2.3 9.5 0.5 2 23 363 385 362 385 0.96 4 16 0.00045 0.036 15.2 2.2 2 23 391 413 390 413 0.95 5 16 0.011 0.9 10.8 0.4 1 23 418 441 418 441 0.94 6 16 0.38 31 5.9 0.4 2 23 444 466 443 466 0.92 7 16 0.0015 0.12 13.5 0.8 2 22 473 493 472 493 0.93 8 16 0.0061 0.49 11.6 0.6 1 23 551 574 551 574 0.90 9 16 2.5 2e+02 3.4 0.1 3 23 603 624 601 624 0.90 10 16 0.031 2.5 9.4 0.4 2 23 647 670 646 670 0.94 11 16 0.00046 0.037 15.1 0.4 3 20 677 694 675 698 0.90 12 16 0.011 0.89 10.8 0.6 1 23 703 726 703 726 0.97 13 16 0.0012 0.094 13.8 0.1 2 23 732 754 732 754 0.92 14 16 0.0014 0.11 13.6 4.6 1 23 758 781 758 781 0.97 15 16 0.00048 0.039 15.1 0.6 2 23 788 809 787 809 0.96 16 16 0.0068 0.55 11.4 3.1 1 23 815 837 815 837 0.97
Sequence Information
- Coding Sequence
- ATGAACTTTGACGAGATAGTTGTGAAGGAGAGCCCGGGGATATGCCGGTGTTGTTTGTCGGAGGGCTGCTACAAGGATTTGGGTACCGAATATACATGGATGAATGAAACAGAAGTCTATGCTGACATGTTACTGGATTGTTTCGATATTGGCATTACTCAGCACAATGATGGCCCTAATGGTGCCAAGAGGCTCATATGTGAGGTGTGCATCACACGGCTGCGGGACGCATGCAACTTCAAGAAGCAGGTGGTGGACACAGAGAGACGCTTCATAGACATGCTGGGGCGAGGAGAGTTCAGGACTAAAGTGTTGACTTACCAGTCTCCGAGGGAGTTGAAAGAGGAGGCAACAGAGGATATGCCAGAAGATGTCATGGCAGAGGATGTGGAGTACCTTGAAGATGTAGATATAGATTATGATGGAGAAGAAGAGGAGGTAAAAACCGAAGTGGTCCAGTCAACATCCGCGGCGTCGAGCTCGGAAAAGCCGCGCCTCAAGCGAGGTCGCCCGCGGAAGGTCGACGATAAACCTGACAAGGGGAAGAAGCAGAAGGTGGCCAAAGGTAGGTCCCAGGGCTTTTACATGATGATGGATTTTGCAAGCAATTTGGTATTAACTAAAGTGATTGCTAAATTTTCACAGCTGAAGTTGGATCGTGCAGTCCACAATATTGTTCTTTTGAGTGAGAAAGGTGTTAAAACGCGGAAATACAAGGGAACCGAGTCTATATCCACGCGTAGACGAAGAAACCTACAGATTCTCTTCAACAACACCTCGATTGTACCTTTTAAATGGCGCGGGAGATATCTTTGCTTCTATTGTAGCAAAGATGCCTCAGAATATACGGAGTTGAGAAAACATACGAAACTCCACGGCGATTGCTCTATACTCGATCATTCTTTGAAATCCTTAAAAGGTGGCACAAATATGGAGATCAAAATTGATGTTTCTGATCTCGCTTGCATTTGCGGGGAACGATTTCCTTCTCTGGGTGAAATAATCAAGCATTTAGAAGCAAAACACAATCTAGAATACGATAAAAATGTAGACATGGCTATAGAGGAATACAGGCTCGCAGATTTAAAATGTCTCAGTTGTGAGGAAAAGTTTTCTTATTTCGGTTATTTAGTGTCACATGTGAATACAAATCATCCGAAAAATTGCCTCATTTGCGACAAATGTAACCAAAACTTTAATAAAAAGCGTGACCTGTTTTCGCACATGAAAAACTACCATAGAGAAGGAGGGTATCAGTGTGAACTCTGTCCGCAAGCGTTTAACTCGCTGAATATACTTCGTAAACATAGGATTAATAGGCATATGACTCGATGCCATATATGCCAATTGAGGCTGCCTTCAGCAGCGTTAAGACAAAAGCATATAGATTTAGAACATCCAGACGATGGATCGTTGCAATGCGACGTGTGCGACAAGCAATTCCATACAAAACAAGGTCTCAGAATGCATGCGAGAAAATGTAAAGGGGATCTCTTTCAGTTATCTATCAAAAAGGAAGATCATACGATGGACTTGGATTTGAACTACGAAGATCCGACGAGACGACCGAGCGTGAAACAAATACGCGAAAATATAGTCATAGTCATTAACATGTCCACGGCGATACCGTTCAACTTTTACAAGAACAAATTTAACTGTTTCTACTGCTCTAAAGACTTTCCTGATTCAGATTCTATGAAAGAACATACGGTTCTTGAACATCCTGTCTGTGATGTCAACGATAAATGCATTAAAAAATGTAGAGAATCTGTCGCGTGCGTTAAAATTGATATAACAACGCTAGCTTGTAAAGTTTGTTTCGAAAATATGCCGAATTTAGATAACCTTCTCGATCACTTGATCGCGAAACATGATGCCAATTACGACAAATCGATTACCACCTGCTTGCAGCCTTACAGACTTATCAAAGACAACATGTCCTGCCCCAACTGCCCTGGTGAAGTGTTTCGATTCTTCGGGACATTGTTAAAACACATGAATAAAAAACACACTAACAACAACATCATCTGCGTTTACTGTGGCGAGAGTTTTCGTCGTGATCAGAATTTACGTGTTCACATTTGGAGACATCATCGCGATGGGCGTTTCAAATGTAACATTTGCGGCGCTGAATGCAATATACCTTCTCGTCTATACATGCATATGGCTAAATCTCACGGCGTTAAAGCGGCGAAATGTCCAAAATGTCCTGAAGCGTTTGCTACGCAATACCTTCGTCAGAAGCATCTGATCGACGCTCACAACTCGGGTCACAAATGTTCTTATTGTGCCAAACTCTTCACTAGGAACTCGTTCATGCGCGATCATATAAGAAGGACTCACTTGAAAGAAAAAAACGTGGAATGCTCCGTGTGTAGTATGAAATTCTTCAACAATGTGCTTTTGAGAAGGCACATGGTTAAGCATAGCGGAGAGAAGAATTTCCACTGTGAAGTGTGCGGCGAAAGATTCTTCTGGCGGAAGAGTTTACGGACGCACATGTCTAGGCACTCTTAA
- Protein Sequence
- MNFDEIVVKESPGICRCCLSEGCYKDLGTEYTWMNETEVYADMLLDCFDIGITQHNDGPNGAKRLICEVCITRLRDACNFKKQVVDTERRFIDMLGRGEFRTKVLTYQSPRELKEEATEDMPEDVMAEDVEYLEDVDIDYDGEEEEVKTEVVQSTSAASSSEKPRLKRGRPRKVDDKPDKGKKQKVAKGRSQGFYMMMDFASNLVLTKVIAKFSQLKLDRAVHNIVLLSEKGVKTRKYKGTESISTRRRRNLQILFNNTSIVPFKWRGRYLCFYCSKDASEYTELRKHTKLHGDCSILDHSLKSLKGGTNMEIKIDVSDLACICGERFPSLGEIIKHLEAKHNLEYDKNVDMAIEEYRLADLKCLSCEEKFSYFGYLVSHVNTNHPKNCLICDKCNQNFNKKRDLFSHMKNYHREGGYQCELCPQAFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLQCDVCDKQFHTKQGLRMHARKCKGDLFQLSIKKEDHTMDLDLNYEDPTRRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVLEHPVCDVNDKCIKKCRESVACVKIDITTLACKVCFENMPNLDNLLDHLIAKHDANYDKSITTCLQPYRLIKDNMSCPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGESFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKSHGVKAAKCPKCPEAFATQYLRQKHLIDAHNSGHKCSYCAKLFTRNSFMRDHIRRTHLKEKNVECSVCSMKFFNNVLLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHMSRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -