Lhir023433.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:11548773-11553094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.0014 19.6 1.4 3 23 328 348 326 348 0.97 2 12 0.6 48 5.3 1.6 3 14 390 403 389 407 0.80 3 12 0.002 0.16 13.1 1.7 1 23 421 444 421 444 0.94 4 12 0.00089 0.071 14.2 3.0 1 23 448 470 448 470 0.98 5 12 0.00088 0.071 14.2 2.1 2 23 489 511 488 511 0.94 6 12 0.00036 0.029 15.5 1.5 1 23 515 538 515 538 0.98 7 12 0.0027 0.22 12.7 0.6 2 23 561 583 560 583 0.90 8 12 4.3e-07 3.5e-05 24.6 2.6 1 23 593 615 593 616 0.96 9 12 0.005 0.41 11.9 1.0 3 23 633 653 632 653 0.98 10 12 0.0021 0.17 13.1 0.9 1 23 659 681 659 681 0.96 11 12 0.085 6.9 8.0 2.9 1 22 687 708 687 711 0.90 12 12 0.0003 0.024 15.7 0.1 3 23 764 784 762 784 0.97
Sequence Information
- Coding Sequence
- ATGTATGAAGAAAAGGAAACATTAAACATGGACATGACAAATATTTCAATCCAAGAAAATATTGAACAATCAGATATCACCGTCAAGGAAGAATTCAACCTCCACATGGAAGAACAAATAGATGTCAAAATTGAGACAGATTATGTACTAGAAAACACAGACAAAGCAGAGTCTTATATCACTGGAAATACAGAACACCAATATGGAGAGACACATTTACATATAAAAAATGAATTATTGAATTTACAAGACCCTCAAAGTGTAGAAATCAATATAAAAGATGAAACAGAAACAGAGAGTATTTTACCTAATAGAGAAATACTGAAAGAGAAATACATTTTACCAAGTAGAGAAACAGAAAGAATTTTATCAAGTAGAGAAATTGAGATTATTTTACCGAATAGAGAAACAGAAAGCATTTTACCAAATAGAGAAGCTGAGAGTATTTTACCAAGTAGTCCTAGTTACAATGCAGTAAAGCTTGAAATAGGACAAGAGGAGAGTGAAATAGTTTCATATGATTATCCGAATTATGAAGATAGTATGGACAGCATTGATGCGACTGCCCTGAGCAGAGTTGAAGCATGCTTGAGTGATGACATTAATATCAAGTCTGAAGATGTTTATCAGGGCTCCCAGAAAGATTTCCCAAAAGTCGTCAAAGAAGAAACAGAACTGACTGTAACAGAAACACATTTGATATCCAACAAATTTATCAACACCACTTCAACTATTACAAGTACACAAGACGGCATCATAGAATCACAAACAACCAAAACCTTGATTATGGAAATACACCCTATGACTCAAACTCTAAAGATGGGGAATCCAGAAGAAATATTGCTGACTAGCAACGAATCTGGCGAAATGGAATGCGAGCCTTTTCAACTGAACTCAATCACTGGAAACATTCTCTCTTTAGAACAAGAAGCTTACGGATTATTGAAAAAGAAAAAATCGTTGTCAACAACGGAAATAGCCTGTCCAAAATGTTCGAAAGTTTTCCATCAAAAATTTGCTCTTAACAGACATTTGAAAGTCCACGCGTCAATTGAAAACCGAGCGAACGGATTAATGAAAGCGCACAAAACGCGAATGGATAAAAAACGAATAAAAGAAGAAGAGAATGAGAAAAAACAGGCGCAGATGAAGAAGGACGATAAAGAATGCTATCAATGTACGTGCGGCAAATCATTTCGAAGGCGGAGTCGTATGGAAACTTGTCTCAGATCGCACACAGAGTATGCAGATTCCAGTTCTTACGATTGTCCGACCTGTGAAAAAAAGTTCAAATCGAAAGAGTTGTTGATATTCCACCGCCAGAGACAACACCGGAAGAGGTTCCCTTGCAAATTTTGCCCAACAGACTATCACACGCAAAAAGAACTCTTCAAACATTTAAGAATTCATCAGAAAGTACAACTGACAGAGTACAAAATAATAGCCGAAGGAAATCAGGATCTACAATGCTTGCTGTGCAAAAAAACCTGTACCAAACTTTCGGATTTAAAGTCTCACATCATGGAAGATCACACGGAACCGTACAAATGTCCACACTGCAAGGAAATGTTTGCAAAAATACAAGATTTCGCCATTCATATAAAGAAGACTCATCCTGATGTGGGAGATCAGTCAGTTCTGGACGTCCTCGAAGCATTTTCGAAGTTGGTCAAAGCGTGGAAGTGTGAAAACTGCGGAAAGCAGTTCCACAAAGCCGATAAATTAGCTTTGCATCAGGTAGAAGAACATGCTCCAGATATGAAGAATGAACAACATTTTCAGTGCAGGGACTGTCAAAGGGTATTCGTCAGCAAAAGTGGTTTAAATTCGCATATGCGGATGCATCACAGAACGGAAAGTACAGAAGAACCTGAACCGGAAGAAGTGGGTGTCTTGTGTTTAGAATGTCGGAAAGTATGCCCAGACATGACCGCCCTAACATCCCACATGCGGCTACACTCAATGGATAGAAAATATCCCTGCAAATACTGTGATTTTCGATTTGCCTCACCTCAAAAACGAAAAAAGCACGCGGAAATCCATACGGGCGACATGAAATACGTATGTTTTATATGCGAATACACGTGTAGTTCCGAAAACCGTCTAAAACAGCACAAAATGTCGATTAAACATGCTAATATGAGAGAATTTCTTCTCACGGGCAAACCATTAATAGAGGATGAACAATCGACATCCAAAACAGAAAAAATAAAAGATACGCTGAGAAAGAAAGAGTGGGGAGTTAAAAAGAAAAAGAAAGTGAAGAAAGAAAAAGAATGCGAAATCGCTTGTGATATCTGTGGCGAGAAATTTTCCAGTGAAGATGAAATGTTAGAGCATAAGCAGACACATCCATTTATAGAGTTCCCTAATGACGATAAGCCCAGTAGGATATTTTTTAAGTGA
- Protein Sequence
- MYEEKETLNMDMTNISIQENIEQSDITVKEEFNLHMEEQIDVKIETDYVLENTDKAESYITGNTEHQYGETHLHIKNELLNLQDPQSVEINIKDETETESILPNREILKEKYILPSRETERILSSREIEIILPNRETESILPNREAESILPSSPSYNAVKLEIGQEESEIVSYDYPNYEDSMDSIDATALSRVEACLSDDINIKSEDVYQGSQKDFPKVVKEETELTVTETHLISNKFINTTSTITSTQDGIIESQTTKTLIMEIHPMTQTLKMGNPEEILLTSNESGEMECEPFQLNSITGNILSLEQEAYGLLKKKKSLSTTEIACPKCSKVFHQKFALNRHLKVHASIENRANGLMKAHKTRMDKKRIKEEENEKKQAQMKKDDKECYQCTCGKSFRRRSRMETCLRSHTEYADSSSYDCPTCEKKFKSKELLIFHRQRQHRKRFPCKFCPTDYHTQKELFKHLRIHQKVQLTEYKIIAEGNQDLQCLLCKKTCTKLSDLKSHIMEDHTEPYKCPHCKEMFAKIQDFAIHIKKTHPDVGDQSVLDVLEAFSKLVKAWKCENCGKQFHKADKLALHQVEEHAPDMKNEQHFQCRDCQRVFVSKSGLNSHMRMHHRTESTEEPEPEEVGVLCLECRKVCPDMTALTSHMRLHSMDRKYPCKYCDFRFASPQKRKKHAEIHTGDMKYVCFICEYTCSSENRLKQHKMSIKHANMREFLLTGKPLIEDEQSTSKTEKIKDTLRKKEWGVKKKKKVKKEKECEIACDICGEKFSSEDEMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -