Lhir022715.2
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:1541920-1543721[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.14 13.3 0.9 1 23 21 44 21 44 0.94 2 12 0.0047 0.37 12.0 0.2 1 21 50 70 50 73 0.89 3 12 0.0082 0.65 11.2 2.6 3 22 115 134 113 137 0.89 4 12 0.05 4 8.7 0.2 2 23 163 185 162 186 0.95 5 12 0.0087 0.7 11.1 0.4 5 23 212 230 209 230 0.94 6 12 6.6e-06 0.00053 20.9 2.2 1 23 234 257 234 257 0.91 7 12 0.06 4.9 8.5 0.3 3 20 264 281 264 283 0.95 8 12 0.0002 0.016 16.2 0.1 1 23 290 313 290 313 0.94 9 12 0.0012 0.098 13.8 0.1 1 22 319 340 319 342 0.89 10 12 0.00054 0.043 14.9 3.7 1 23 346 368 346 368 0.93 11 12 5.9e-06 0.00047 21.1 1.0 1 20 374 393 374 396 0.94 12 12 0.11 9.1 7.6 1.0 1 23 402 425 402 425 0.91
Sequence Information
- Coding Sequence
- ATGTTCGATACGTCGGAAGATAAACAGAAACATTTAGCTGAGTCACTGAACTGCTGGCTGTTCTCGTGCCACGTCTGTAACGAGAAATTCATGTCGCCCAGTCTCAAAGTGAAGCACTTACAAGCCGCACACAACATAGCGACGCATTATACGTGCCCGGAATGTCCGGCGGTTTTCATCGACAAAGGCAAGCGGCGTACTCATTTCACCGCTACCCATACGGATAAATTTAAATGTTCTTGCTGCAAACTATCCCCCAATGTCATCGCGCGGAATAACGCCGCTCTGTTAGTGCAGTATACTACGGCTTATCCGTTCCGTCTGCCATCCGATGACGTCTGTTGTACAATCTGCTGCAAGGAGTTCAGTGACCCGGAAGAGTTTAGGCAGCACATGATGCAGGATGATCACAAGTCTCCTCATAAGATACTGCGTCTCCTGTTACCCTCCCAAACCGCTACGCTTAAAGTAGATATCACCGATCTTCGGTGCCGTGTGTGTTCGGCTGTTTTTGATAATTTGGAAGACATTGCTTCGCATTTGTCCACGATTCATCATATTTCCGCCCTTAATTTATCTTATGATTTAGGCGTACATCCTTTCAAAATTTACAAAGATATTAATATTTGTATATTTTGCCCGGAGAAATTTGTAACTCTACGCGCTTTAAGCAGGCACACTCAAACGCATTATTTAAAGCATACTTGCGAGACATGCGGGAAATCTTACTCGAATTCGAGTTCTCTTAAAGTGCACACCACGTTCGCTCATCTCGGTCCGAAGGCATGGTGCAAAAAATGTAAAACTATGTTTGATTCTGCCGAAGATAAACAGAAACATTTGGCAGAGTCACTGAGCTGCTGGTTGTTTTCGTGTCCTATCTGCGGTGAGAAATTCATGTCGCCAAGTCTCAAAGTGAAGCACTTGCAAGCCGCGCACAACACTTCAAGTGATTACACCTGCCCTGAATGTCCTGAAGTTTTCATAGACAAAGGTAAACGGCGAAGTCATTTCATCGCTGCTCATACGAATAAATTTAAATGTACTTGCTGCGATAAAACATTTTCGACGAACTCTAAGTTAATTAATCATTCCGTGGTACACTCGGCGGAAAAGAAATTCCAATGCAACGTATGTTTAAAAGAGTTCAGTAGGAAGAATAATTTGAAGCAACATATGCCGATCCACATGGACGACAAACCGTACAAATGTATTGCTTGCAACAAACAGTTTAATCAACGCGTTGTTTGGAAGACACACATGTCTTCCTACCACCCTGAAGTAGACACTACGAAACCTTGA
- Protein Sequence
- MFDTSEDKQKHLAESLNCWLFSCHVCNEKFMSPSLKVKHLQAAHNIATHYTCPECPAVFIDKGKRRTHFTATHTDKFKCSCCKLSPNVIARNNAALLVQYTTAYPFRLPSDDVCCTICCKEFSDPEEFRQHMMQDDHKSPHKILRLLLPSQTATLKVDITDLRCRVCSAVFDNLEDIASHLSTIHHISALNLSYDLGVHPFKIYKDINICIFCPEKFVTLRALSRHTQTHYLKHTCETCGKSYSNSSSLKVHTTFAHLGPKAWCKKCKTMFDSAEDKQKHLAESLSCWLFSCPICGEKFMSPSLKVKHLQAAHNTSSDYTCPECPEVFIDKGKRRSHFIAAHTNKFKCTCCDKTFSTNSKLINHSVVHSAEKKFQCNVCLKEFSRKNNLKQHMPIHMDDKPYKCIACNKQFNQRVVWKTHMSSYHPEVDTTKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634741;
- 90% Identity
- -
- 80% Identity
- -