Lhir022886.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:3370844-3372775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.9 3.1e+02 2.8 4.6 3 23 48 68 46 68 0.96 2 16 0.36 29 6.0 0.7 2 16 96 110 95 118 0.83 3 16 0.44 35 5.7 0.6 1 23 137 160 137 160 0.96 4 16 2.1e-06 0.00017 22.5 1.5 1 23 165 188 165 188 0.96 5 16 0.0026 0.21 12.7 2.4 1 23 192 215 192 215 0.92 6 16 0.011 0.86 10.8 0.4 2 23 218 240 217 240 0.95 7 16 1.9 1.5e+02 3.8 0.3 2 19 247 264 247 266 0.92 8 16 0.00031 0.025 15.7 3.3 1 23 340 363 340 363 0.95 9 16 1.6 1.3e+02 4.0 0.2 3 23 394 415 392 415 0.90 10 16 0.00037 0.03 15.4 0.3 1 23 436 459 436 459 0.96 11 16 0.024 1.9 9.7 0.5 3 21 467 485 466 486 0.93 12 16 7.2e-06 0.00058 20.8 1.1 1 23 494 517 494 517 0.94 13 16 0.0057 0.46 11.7 2.1 1 23 522 545 522 545 0.96 14 16 0.00036 0.029 15.5 4.0 1 23 549 572 549 572 0.97 15 16 0.0007 0.057 14.5 1.8 2 23 579 600 579 600 0.95 16 16 5.2e-06 0.00041 21.3 0.8 1 23 606 628 606 628 0.98
Sequence Information
- Coding Sequence
- ATGTCTTTATTCGTAAATTATTTCTTTTCAGATGTAAACTTCAAACGGATAGTGTTACCGATAGAGCAAAGACGGCGCAACCTCGAGATTTTGTTCAACAATAGCACTGTCGTGCCATTTAAACATCGCGGGCAGTGCTTGTGCTTTTTCTGCGGTTTAAAAATGAAAGATCGTCAACATTTGGTAGAGCACACACAGTCGCACCTCCCTTGCACCAGTAAACATAACTCGTTAAAAGCTTTGAACGTGGCAGACTTCGAAATCAAAGTCGACGTCTCAGAAATACAATGTAAAATTTGCTCTGAAAAGTTCAACAACATTTACAGTTTAGGGTTCCATTTGGCTCACAAACATAAACTTTCCTATGACTCGGGCACTACAGGCTTAATCGCATACAGACTGGTCGATTTCAAATGTATCATATGTTTGAAAAGGTTGAATACTTTAAGAGGTCTCATTCAACATACCAACAAGGAGCATCCCGTTAATTACTTTGAATGCGACGAGTGTGGAAAGAGATTCAGAAGAAAGCACGATCTGTTAGGCCATATCAATCAAATGCACAATGCAGAATTTAAATGTCCAAAGTGTCCGGAAACTTTTAAATCGAAAGTAGATTGTGCAAAGCACAAGAACGAAGATCACATCTCGCAATGTAATGTCTGTTTCAGAATGTTCGCCTCGTCTGTACTGCGACTGAATCATATGAAGGGCGAACATGATATAGCCATGGGTGGCACTTGTGGGTTCTGCAATAAAAAACTGAACACACGTTTCGCGTTTCTGGACCACGCAGGAAAGTGTTCTGTCGGAGGTCCGGTGAACGTTGAACTGTCTTTAACACAGCTCAAGACGGACACGGATGTTCAAAACACCGTGTCCTGGGGCGCTTCGGTCAAATCGGAGCCAATTACAGAAATGGTCGCAATGCGAGAAGCTAAGAAAACCGCTAGGAGTAATATAGCCTACGTATTCAATAACACCACGGTAATTCCTTTTAAACGGTTCCACAACAGGTTCCGATGTTTCTACTGTCCAAAAGAGTTTAACAGCTGCAACGATTTAAGAAATCATACGATGGAAGAGCATCCAGTGTGCGATGTTAAACTGAAATGTATGAAACTGTCCGGATTCGGATATCAGTATATGTGGATAAAAGTCGATTCTTCTTTCCTGGCGTGTAAATTATGTCACGCCCAGTATGAAGACATGAGAAGTTTGATGGGGCACTTGGAAGCTGAGCACGGGGCGACACTCGGCAACTGTGCCGAGAAACTTTTACCTTTCAAACTGATCGACGATCATTACCCGTGCCCCCAGTGCGGTGAAGAGTTCTCCAACTTTAGTAATACGCTAATACATTTCAACAGAGAGCATAACACGGAAAACAGAGTTCTATGCGTCACGTGTGGCGAATCGTTCCATAGTTTAACCTCACTTCAGATACATAAAAATCGCTGTAATATCGCTCCCGAACGTTTCAAGTGTACCAGATGCGATCTGGGATTCTACAATAAGAGTCAACTTACACGGCATATGGGCAATGCACACAAAAAGAAAGTCTTCAAATGTCCTCATTGCACTGAATTTTTTGTGTCTGAACACGCAAAAATGGTGCACATTATTAAAGATCATAAAGGCGGTCATCAGTGCACTCATTGCGATGCTTCGTTCATATTCCGCTCGCGTTTGATTCAGCATATTAAAAGATTACACCTTCTAGAAAAAAATGAGAAGTGTGCGTTTTGTGATAAGACATTTTTCGATCAGCGCAGGTTGAAAAATCACATGGTCCTGCACACTGGAGAAAGGGCTTTCAGTTGTGATTATTGTGACAAAACGTTTTCTTGGAAAAAAAATCTGATCAGTCACATAAATGTGCATTTAAAGAATGCGGGCCATGATAGGAAGAGGAAAGAAAGAAAACAATGA
- Protein Sequence
- MSLFVNYFFSDVNFKRIVLPIEQRRRNLEILFNNSTVVPFKHRGQCLCFFCGLKMKDRQHLVEHTQSHLPCTSKHNSLKALNVADFEIKVDVSEIQCKICSEKFNNIYSLGFHLAHKHKLSYDSGTTGLIAYRLVDFKCIICLKRLNTLRGLIQHTNKEHPVNYFECDECGKRFRRKHDLLGHINQMHNAEFKCPKCPETFKSKVDCAKHKNEDHISQCNVCFRMFASSVLRLNHMKGEHDIAMGGTCGFCNKKLNTRFAFLDHAGKCSVGGPVNVELSLTQLKTDTDVQNTVSWGASVKSEPITEMVAMREAKKTARSNIAYVFNNTTVIPFKRFHNRFRCFYCPKEFNSCNDLRNHTMEEHPVCDVKLKCMKLSGFGYQYMWIKVDSSFLACKLCHAQYEDMRSLMGHLEAEHGATLGNCAEKLLPFKLIDDHYPCPQCGEEFSNFSNTLIHFNREHNTENRVLCVTCGESFHSLTSLQIHKNRCNIAPERFKCTRCDLGFYNKSQLTRHMGNAHKKKVFKCPHCTEFFVSEHAKMVHIIKDHKGGHQCTHCDASFIFRSRLIQHIKRLHLLEKNEKCAFCDKTFFDQRRLKNHMVLHTGERAFSCDYCDKTFSWKKNLISHINVHLKNAGHDRKRKERKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -