Lhir022380.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387379.1:43188689-43211974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.93 75 4.7 1.3 2 23 262 283 262 283 0.85 2 12 0.038 3.1 9.1 2.5 1 20 288 307 288 312 0.93 3 12 0.00068 0.054 14.6 1.3 2 23 422 444 421 444 0.94 4 12 0.0022 0.18 13.0 0.0 1 23 450 472 450 472 0.96 5 12 0.009 0.72 11.1 0.2 1 23 482 505 482 505 0.90 6 12 2.1e-06 0.00017 22.5 4.6 1 23 510 532 510 532 0.98 7 12 4.5e-06 0.00036 21.4 1.0 1 23 538 560 538 560 0.98 8 12 1.4e-05 0.0012 19.9 3.1 1 23 566 588 566 588 0.98 9 12 3.7e-07 2.9e-05 24.9 0.1 1 23 594 616 594 616 0.98 10 12 0.11 8.9 7.6 6.3 1 23 622 644 622 644 0.98 11 12 0.00078 0.063 14.4 0.4 1 23 803 825 803 825 0.98 12 12 1.8e-05 0.0014 19.6 3.4 1 23 831 854 831 854 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTCTCTATAATTCCACTGTTTGTAGATTATGTGGTGAAGAAAATGACAATGGAACATTTTTATATTCAGCTGAAGAAAATAATCAAAACATAAGCGATCAAGTTAATGCATATCTGCCTATCAAGGTATGCGATGATGGCCAACTGCCACGAACTATTTGTCCTGGTTGTACCATACAGTTGGAAGCCACCGTAGAGTTCATAAACTTGATTGTCAATGGACAGAAAGTGATCAGAGCCCTTCATCAGAGAGAGTTAGAATATAAAAAGACTGTTTTGGAAGAAACACAAACTGTTTCAGAAAATTATGTGTCTGAAGTGGACATGGAGAATGGTGCATACCAACCTGATCACGCGATCTCCCTCCAAGTGGCTGGCGTGGACAAGCCGCGTCGCAAGCGCGGCCGTCCCCCCAAGAAGCACAAGACGCCCGAGGAGGTGGAGCAAGAAGCCGCCCTCAAGGAGCGGGAGCTGCAGCAGGCCAAGCAGGAGAGGGGGGACGAGGAGGCCACGGGCAAGAGGAAGAGGAAAACACCCACTAGGTTCAAGGAGGTCGTCCAGGGTAAAGAGCTAGAGAAGATCTTCAAAGAGGAAGGCGTGACGGACGGTGAGGAGAGCGAGCCGGAACTGAAGCCGGACGTAGAGCTGCCGAGCCCGGAGCCCGCGCTCAAAGTTCCCGAAGTGATCGGACACACCGACTCGGGGGAACTGGTGGTCGTCGTTAAGGGAAAAGGGAGGGGGAGGCCTAAAGGTCGTCTGAACCAGAAGCGCGAGAAATGCGCGATATGCGACAAGGAGTTCTCGTGCTCCGGCCGCTACATGTCGCACGTGGCGCAGCACGGCCCGGTGCTGTACCAGTGCCGGCAGTGCTCCGAGACCTGCAGCACGCGGCTGGAGTTCAACAAGCACCAGGCGGACACCGGCCACCAGGGACAGAATGTCATCCCGTGCGAGAAGGACAACCTCGCTGCATCCACGGAGAAAGATCCCCTGGCGCTCAGTCCTGCATCTACCCAAGTAGAAGTGAAGACTCCTGACGCCGGCCCTGGCGGCTCCTTGCCGGATTTGAATCCGGAACCGGCCAGCGCGGCCGAGAACGGTGCAACCAATGTACCGATGGAGACTGAATCTGATAAAGCGGACTCTACAGAACCACCGGGGAAAGGAGACGCAACTGACCAAACTGCCGCCCGTGAGGATAAGGGCTCTGAGGAGCCTCCGGAAGCAGCTGCGAGCCCGGGGAAGGTGAAACTGTCCTGTCCGCACTGCGAGAAGATGTTCAGTAGCAAGCAGAGCCGCTCCATGCATATTCGGGCGGCGCACAGAGGTGAGCGTCCGTACGCATGCTCGGTGTGCGGCGCCGTGTTCGCGTACCCGCGCGCGCTCGCGCTGCACCGAGTGAAGCACCGCGCGCGCGCACCTGCCGCGCCGGGGTACGCCTGCGATCTCTGCGGGAAGGTGCTAAACCACCCGTCGTCCGTAACATATCATAAGGAAGCGGAACACTCTAACCAGAAGTTCGTGTGCAACAAGTGCAACAAGAGCTTCAAGCACAAGCAGCTGTTGCAGAGACATCAGCTAGTGCACACACAGCTGCGCCCTTACCAATGCAAGCTATGCAACGCGTCGTTCAAGACGAAGGCCAACCTGTTGAACCACCAGCTGCTCCACTCGGGCATAAGGCAGTACGTGTGCGAGCTCTGCAAGCAGCGCTTCTCACACAAGACCAGCCTCACGCTACACATGCGCTGGCACAAAGGTCTGAAGCCGTACGTGTGCAAAGTGTGTGGCAAGGCGTTCAGTCAGAAGGGCAACCTGTCGGAGCACGGCCGGATCCACACCGGCGAGAAGCCGTTCCAGTGCGTGCACTGCTCCGCACGCTTCACCACCTCCTCGCAGCACAGGCTGCACCTCAAGCGGCACGCGGCTGGAAACGATGCGCGCGCACAGTCAGTAACATACTACCAACACACTGCTGCGCTACACCACATTACACTCCACTACTCCGAACTACACTACTCTGCACTAAACTACACTACTCCGCATTACACTACTCTACACTATATCACTCTACACTGCAGTACACTATACTACTCCTCCGGAGAGGTGCTTGAGACACCCATTTTAAAACGCTCTTTGTTGAAGCTCGTCGGGAAAACCTTCCGAGGAAGGACATTCCACATTTTGCTTGTTCGCGGGAGGAAGGAGCGTGAGAACCTATTGTGGGATTCCAGTGATTCCAGTATGTGTATGGGATTTCCAGTTTTGCGAAATGTGGGGCAGACGGCGGGCACGGGCGCGGGTGCGGGGGGTGCGAGTGTGGGTGCGGGGTCGGGCGGCGGCGTCGCGGCCCCTCCCCCCTCCCCGCCGACGCCGCACACGTTCTCTGGCGGCGTGTACGCGTGCGGGTGGTGCGGACGCACTTGCGGCTCGCGCTGGGCGCTCTCGAAGCACGCGCGCCGACACACCGGCGAGCGGCCCTTCAAGTGTCCGCTCTGTCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGCACGTGCACAAGCAGGTGAGCCTGCTAGCGAAGCATGCGCCGGTGAGCATCGCGCCGGTGAAAATTGCGCCGGCGGTCGCTCGCTCCGCTCGGCCGGCTCGATCTCCCGAGCCGCGCACTGAGCTCGTGGTGGAGACCTCCACGGACGGAGTCGAGGAGCGCGTCATATACGTGACATACGACGTGGACGACCCGCGCTCACCTGATTACCAGCTCATCGACCCGGAACAGGCGGCGGAGCTACTGGAACGGTCAGACGTGACTGCTACGGAGTTGTACTCGGAGACATTTGTCGCAAAGAAGGAGGAAACGGAGCCGCGGGAGCATATGTCGGTGACGGACGAGCAGGGCAACCCGCTGCACTTCACGATGCAGGATGGCACGCAGCTCGCCATCACGTCCGTGGACGGACACTCCTTGCAGGTAATCACTGAAGACGGCCAGACTATACCGGTTGAGATCAACGGGTTCTCGCAAGATGAAGTTCAGATCTCTGCGCCCGCGCCTACGCAACGCCTCGCGCTAGATAAATCCGACGAGGAGCCGAATTCTTCCATTACTCACTACTTTGCGATCGTGTAA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTFLYSAEENNQNISDQVNAYLPIKVCDDGQLPRTICPGCTIQLEATVEFINLIVNGQKVIRALHQRELEYKKTVLEETQTVSENYVSEVDMENGAYQPDHAISLQVAGVDKPRRKRGRPPKKHKTPEEVEQEAALKERELQQAKQERGDEEATGKRKRKTPTRFKEVVQGKELEKIFKEEGVTDGEESEPELKPDVELPSPEPALKVPEVIGHTDSGELVVVVKGKGRGRPKGRLNQKREKCAICDKEFSCSGRYMSHVAQHGPVLYQCRQCSETCSTRLEFNKHQADTGHQGQNVIPCEKDNLAASTEKDPLALSPASTQVEVKTPDAGPGGSLPDLNPEPASAAENGATNVPMETESDKADSTEPPGKGDATDQTAAREDKGSEEPPEAAASPGKVKLSCPHCEKMFSSKQSRSMHIRAAHRGERPYACSVCGAVFAYPRALALHRVKHRARAPAAPGYACDLCGKVLNHPSSVTYHKEAEHSNQKFVCNKCNKSFKHKQLLQRHQLVHTQLRPYQCKLCNASFKTKANLLNHQLLHSGIRQYVCELCKQRFSHKTSLTLHMRWHKGLKPYVCKVCGKAFSQKGNLSEHGRIHTGEKPFQCVHCSARFTTSSQHRLHLKRHAAGNDARAQSVTYYQHTAALHHITLHYSELHYSALNYTTPHYTTLHYITLHCSTLYYSSGEVLETPILKRSLLKLVGKTFRGRTFHILLVRGRKERENLLWDSSDSSMCMGFPVLRNVGQTAGTGAGAGGASVGAGSGGGVAAPPPSPPTPHTFSGGVYACGWCGRTCGSRWALSKHARRHTGERPFKCPLCPRAFADCSNLNKHKKHVHKQVSLLAKHAPVSIAPVKIAPAVARSARPARSPEPRTELVVETSTDGVEERVIYVTYDVDDPRSPDYQLIDPEQAAELLERSDVTATELYSETFVAKKEETEPREHMSVTDEQGNPLHFTMQDGTQLAITSVDGHSLQVITEDGQTIPVEINGFSQDEVQISAPAPTQRLALDKSDEEPNSSITHYFAIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -