Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387387.1:1545129-1549998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2e-07 9.9e-06 26.4 1.7 1 23 15 37 15 37 0.98

2 14 0.043 3.4 8.9 0.1 2 23 124 146 123 146 0.95

3 14 0.00016 0.013 16.6 1.4 1 23 169 191 169 191 0.98

4 14 7e-05 0.0056 17.7 0.6 1 23 195 218 195 218 0.93

5 14 0.003 0.24 12.5 0.1 2 23 257 279 256 279 0.95

6 14 1.9 1.5e+02 3.7 0.4 2 23 298 320 297 320 0.93

7 14 1.6 1.3e+02 4.0 0.3 2 23 343 365 342 365 0.87

8 14 0.00098 0.079 14.1 0.0 2 20 370 388 369 389 0.94

9 14 0.04 3.2 9.0 0.5 2 21 397 416 396 417 0.93

10 14 0.01 0.81 10.9 0.7 2 23 425 447 424 447 0.94

11 14 0.048 3.9 8.8 1.6 2 23 454 476 453 476 0.89

12 14 0.00022 0.017 16.2 1.8 2 23 482 503 481 503 0.95

13 14 0.00017 0.014 16.5 4.0 1 20 509 528 509 531 0.95

14 14 7e-05 0.0057 17.7 1.3 1 23 537 560 537 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2e-07	9.9e-06	26.4	1.7	1	23	15	37	15	37	0.98
2	14	0.043	3.4	8.9	0.1	2	23	124	146	123	146	0.95
3	14	0.00016	0.013	16.6	1.4	1	23	169	191	169	191	0.98
4	14	7e-05	0.0056	17.7	0.6	1	23	195	218	195	218	0.93
5	14	0.003	0.24	12.5	0.1	2	23	257	279	256	279	0.95
6	14	1.9	1.5e+02	3.7	0.4	2	23	298	320	297	320	0.93
7	14	1.6	1.3e+02	4.0	0.3	2	23	343	365	342	365	0.87
8	14	0.00098	0.079	14.1	0.0	2	20	370	388	369	389	0.94
9	14	0.04	3.2	9.0	0.5	2	21	397	416	396	417	0.93
10	14	0.01	0.81	10.9	0.7	2	23	425	447	424	447	0.94
11	14	0.048	3.9	8.8	1.6	2	23	454	476	453	476	0.89
12	14	0.00022	0.017	16.2	1.8	2	23	482	503	481	503	0.95
13	14	0.00017	0.014	16.5	4.0	1	20	509	528	509	531	0.95
14	14	7e-05	0.0057	17.7	1.3	1	23	537	560	537	560	0.97

Sequence Information

Coding Sequence: ATGCTGCTCGATCATTTCGTTGTGCATTCGTCCGAGAAGAAGTTCCAATGCAACGTGTGCTCGAAGGAGTTCAGCAGGAAGCAGAATTTAAAGCAACACATGCTGGTCCACATGAACGACAAACCGTATAAATTAATAACTCACAATGACATCGCGCGGGGAAACGCTACTCTATTAGTACAACACACAACGACGTATCCGTTCAGACTACCAACCGAAGATATCGCTTGCCTGGCATGCTGCAAAGAATTCCACTGCCCGGAAGAGTTTAGGCAACACATGATAGAAGATGAAAAGCATGTATCTGCTCAAACGCTGTTGCGTTCCATTCCCAAAACTTGGCAAGTTAAAGTCGATATCACGGAACTCCGTTGTCGAATATGTTTCCAAAGTTTCGATAATTTGGTAGATGCAGCGGCTCATTTATCCACAGTCCATCTCGTATCCAATTTCAACCTGAAACATGATTTAGGTGTTCATCCTTTTAAAATTTATAAAGATTCATATATCTGCCATATTTGCTCTGAGAAGTTCGTCAGTATTCGTGCTTTGAGTAGACACACGCAAACTCATTATGTTCAGCACACGTGTGAGATGTGTGGCAAGTCCTATGCGACAATGGATGCGCTCAAAGTACACGTAAATTTTTCTCATAAAGAGTGTCTACTGACCGTGTGGGATGGGAACGTAAACACTCAAACAAGAAACGCCAAGGTTATAGTTGCAAATAGTACGATATATCCGTTCAAATTGCCTCACAGTAATATGGTGTGTTATTACTGCGACGAAGAGTTTGAGGAGCCGCCTTTATTCCGGCAACACATGAAGGAAAACCATTCGTCTTCCCGTGTACTAACTCATCGGGTGGTTAAAGCTGATTGCACAGAATTAACGTGTCGCCACTGTATTAAACCTTTCGATGACGTTCAATCTGTAGCGGAGCATTTGAAAAACGTGCACAAGTTAAACATCGATCTAAACAGAAGTTTGGGGGTGGTACCTTTTGTGTTGCCCGATCGACAATGGACGTGCGCTTTGTGTAAAGTAAAAGAACCCACGCTTCGCACCCTCAGCAAGCATATGAGCACGGCTCATTTCTCTGCGGTTACGTGCGAAGAGTGCGGCAAACATTTCGCTACCGTGCGAGCCCTGACCGTACACGTGGAATGTAACCATAATAAAATCCTGAAATGTACAAGGTGCAAACAGGTTTTCGACACCGCGGAAGAGAGAAGCAAACATTACAAGGTGTCGCCTTCTTGTTGGAAGTCCGTGTGTCAAATATGCAATATGAGGTTTATGAACTATGGATATAAAAGGAAACATATGCAGGATGCACATAATATGTGGAAAACCGTGACATGTACTGAATGCGGCGAAATATTTTCTTCTTCCAAAAAATGCAGTGTTCATTTTAGATTAGTTCACACTGATAACAAATTGTGTTGCGCCTTCTGTCCTCAAGTATTCGCTGACAAATCAACGTACAGTAAGCATATGACCACTCACACGAAGGAGAGACAGTTCTCGTGCTCCGTATGTGAGAAAAAATTTACTCGCCAATGTAATCTGAAACAGCACTTGTGGAATCATAGAGAAGAGAAGCGGTTTAAATGTGCTACTTGTAACAAACAATTTAACCAAAAAGTTACATGGAAGGCGCATATGGCACGCTACCATGATGTGCGAACTGAAGATTTGTAA
Protein Sequence: MLLDHFVVHSSEKKFQCNVCSKEFSRKQNLKQHMLVHMNDKPYKLITHNDIARGNATLLVQHTTTYPFRLPTEDIACLACCKEFHCPEEFRQHMIEDEKHVSAQTLLRSIPKTWQVKVDITELRCRICFQSFDNLVDAAAHLSTVHLVSNFNLKHDLGVHPFKIYKDSYICHICSEKFVSIRALSRHTQTHYVQHTCEMCGKSYATMDALKVHVNFSHKECLLTVWDGNVNTQTRNAKVIVANSTIYPFKLPHSNMVCYYCDEEFEEPPLFRQHMKENHSSSRVLTHRVVKADCTELTCRHCIKPFDDVQSVAEHLKNVHKLNIDLNRSLGVVPFVLPDRQWTCALCKVKEPTLRTLSKHMSTAHFSAVTCEECGKHFATVRALTVHVECNHNKILKCTRCKQVFDTAEERSKHYKVSPSCWKSVCQICNMRFMNYGYKRKHMQDAHNMWKTVTCTECGEIFSSSKKCSVHFRLVHTDNKLCCAFCPQVFADKSTYSKHMTTHTKERQFSCSVCEKKFTRQCNLKQHLWNHREEKRFKCATCNKQFNQKVTWKAHMARYHDVRTEDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -