Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387387.1:1618257-1625164[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.23 19 6.6 0.0 2 23 120 142 119 142 0.91

2 19 2.2 1.7e+02 3.6 0.2 1 10 164 173 164 175 0.90

3 19 0.00019 0.016 16.3 1.7 1 23 229 251 229 251 0.97

4 19 0.0046 0.37 12.0 1.5 1 23 322 344 322 344 0.98

5 19 0.011 0.89 10.8 0.2 1 23 348 370 348 370 0.94

6 19 0.00053 0.043 14.9 0.3 1 23 375 400 375 400 0.95

7 19 0.013 1.1 10.5 2.6 1 23 406 429 406 429 0.96

8 19 0.0001 0.0081 17.2 0.1 1 23 436 459 436 459 0.98

9 19 0.0004 0.032 15.3 0.9 1 23 465 487 465 487 0.98

10 19 0.011 0.89 10.8 0.5 1 12 494 505 494 508 0.92

11 19 0.072 5.8 8.2 0.4 1 23 623 645 623 645 0.98

12 19 3.6 2.9e+02 2.9 0.1 3 23 671 692 670 692 0.94

13 19 0.59 48 5.3 0.1 1 23 718 740 718 740 0.91

14 19 0.00039 0.031 15.4 0.2 1 23 744 766 744 766 0.98

15 19 0.00053 0.042 14.9 0.6 1 23 771 794 771 794 0.94

16 19 0.0039 0.31 12.2 0.3 2 23 801 823 801 823 0.93

17 19 0.052 4.2 8.7 6.5 1 23 830 853 830 853 0.96

18 19 0.0002 0.016 16.2 2.4 2 23 860 881 859 881 0.96

19 19 0.00028 0.023 15.8 2.1 1 23 887 909 887 909 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.23	19	6.6	0.0	2	23	120	142	119	142	0.91
2	19	2.2	1.7e+02	3.6	0.2	1	10	164	173	164	175	0.90
3	19	0.00019	0.016	16.3	1.7	1	23	229	251	229	251	0.97
4	19	0.0046	0.37	12.0	1.5	1	23	322	344	322	344	0.98
5	19	0.011	0.89	10.8	0.2	1	23	348	370	348	370	0.94
6	19	0.00053	0.043	14.9	0.3	1	23	375	400	375	400	0.95
7	19	0.013	1.1	10.5	2.6	1	23	406	429	406	429	0.96
8	19	0.0001	0.0081	17.2	0.1	1	23	436	459	436	459	0.98
9	19	0.0004	0.032	15.3	0.9	1	23	465	487	465	487	0.98
10	19	0.011	0.89	10.8	0.5	1	12	494	505	494	508	0.92
11	19	0.072	5.8	8.2	0.4	1	23	623	645	623	645	0.98
12	19	3.6	2.9e+02	2.9	0.1	3	23	671	692	670	692	0.94
13	19	0.59	48	5.3	0.1	1	23	718	740	718	740	0.91
14	19	0.00039	0.031	15.4	0.2	1	23	744	766	744	766	0.98
15	19	0.00053	0.042	14.9	0.6	1	23	771	794	771	794	0.94
16	19	0.0039	0.31	12.2	0.3	2	23	801	823	801	823	0.93
17	19	0.052	4.2	8.7	6.5	1	23	830	853	830	853	0.96
18	19	0.0002	0.016	16.2	2.4	2	23	860	881	859	881	0.96
19	19	0.00028	0.023	15.8	2.1	1	23	887	909	887	909	0.98

Sequence Information

Coding Sequence: ATGACATCGAGAACCTATATCGGATTTTCTTTATTTTTAGGAAGAAAAACTCAACCGATAGAGATAAAACACGAGGCGGAGTCCGATTCAGAGAATTACGTAGCGAGCCTCGCGGCGGAACCCTCCGACGGCGCCCAGAGGCGGGCTGCCTTCAGAAATAACATCGCTACCATCCTCGACGCGTGCACCGCGTACCCCTTTAAATATAGGAAGGGCACCTACCTCTGCTTCTACTGTAAGATGACTTTCCTAGAGCCGGAGAGACTTCGAGAACACAACACTCTCCACCACTCGGAACCCGACCAACTGTACAAACCGAAGAAATACGAACCTTTAAAAATGGACTTTTCAAATACCACCTGCAGAATCTGCAACGTACCTATCGAAGATTACGCTAATTTAAAAGCTCACCTCACGGCCGAGCACGGGAAAATAATCGACTGCACGTGGGGGGACAGCgtcctgccttacaagctgagcaaagaagaacaccgctgccaggtctgcgggagacgatacgagatgttccttaGTTTTGATGAGAATCGAGAAACAAGAATCAAACTTGAAACAAAAACAACCGTAACTGAGAAACAAGCCGAAGATATCGCAGCAAGAAAGAAACGAGCGTACACGCTTATTGAATGCTCTAGAATATGTCCGTTCAAGTGGATGAAGAACCTGTATTTCTGTTTCTATTGTGAAGAGCATTTCCCAGATCCCGAAGACCTGAGGAAGCATCAATCGAATCATTCTACCATCACACCTGCGTTATTGAGAAACGGCAGGAGGCTTAAAAAACATGAATTGATCAAAGTAGATATCACTGATGTCGGTTGTAAACTCTGTGAAGACACCATACAGAACTTTAGAGATCTTAAAATACATTTACAAAGAAAACACAAAAAGGACATAGATCCAAATTCCGATGGAGTTTTGCCGTTTAAAGTAACAAAAGACAGCTTTAAATGCGCGTTGTGTGATAAAATAAGTGATGAATTTAAATCACTGAATCACCACATGAATATACATTATCAGAACTTCATATGCGAACAATGTGGGTCAGGATTTGTGACTCCTGACAGACTGAGAGTCCACTCGTTTTCGCACGAAACTGGCGCATTCAAATGCGATGCGGAAGGCTGTGATAAAGTATTCCGATCGAAAAACAACAAAAACGAACACTACGCCATAGTTCACATGAAAAGAAAGCGACACAGATGTCCTCAATGCACGGAGACATTCATCAACTATTTCCAAAGATCCAAGCATATATCTTCAATCCACGGAGTCAAGTTAAAAGAGTTCAAATGCGACTTGTGTCCTAAAGTGTACACTCTAAGCGGGAAGCTCGGGGTTCATATTCGGACGGCCCATATGAAGATGAAAAGGTTTACATGTGAAGTCTGCTCGTGGAAAGTCTACTCGAGAACAGAATTAAAGCAGCACATGTTGAAACACGTCGCGATCAACAGGAGGTTCATGTGCCACGATTGTAACAAGACCTTCTCGAGAGGAGCGAGCACTGTCCCCACATCCGGCCGGCCAGTCGGACGAATTGTGCCGCTATTCCAAGTAGCATACGATCGCAGCCTATGCAAACCACTGGGGACCATCAGCGACTTCAGTAAACTTAGGAACAAAATCTTCTCCGCGACGGAAACTGTCACTTTTACCGTATCGAGAAGTGCGTCGCCCGTTTCGCCCGCTCGGTCTATCTCGCCTTTCCAACCCGAAGACACCAACCCTCCCGCCAAATTTTTACTCAAGCCAGAGCCAAAAAAGAAAAGTTCAGGCACGAGGCAGAACGCCTTAACCATCTTCGAATTCTCCACTGCCTACCCGTTCATATTCTCGAACAACAAATTCAAATGTTTTGTCTGTTCGCAACCTTACCTCGATCTCGTCCTCTTGAAGCAACACATGCAGGAACACACATTCGCGTCTCTAAAACGGCTAGTGAACAATAGGAAAGAAAACGTTTTGAAAGTCGACGTTAGCGACATGGCATGCAAACTGTGCTCGAGTCCTATCAGAGATTTGGTCACGCTGAAACTCCATTTAAAAGAAATCCACGCGAAACCTATCGACATAGAACTCCAAGACAATTTGATTCCGTTCAACTTGAACATATTTACAGTTAACGAAGGGTATCAATGCGTCATTTGCGAGCAAAATTTTATTAAAGTCCGCATATTGGTGATTCACATGAGCGCTCACTTTAGCAATTACAGCTGTGAAATTTGCGGCTCAGGATTCATGACGCTACGATTGCTTAAGAAACATTTAGAGGTTCACGAGACGGGTAATTTTCCGTGTGATCGATGTGATAAATCATTCACGACCAGCTACAAACGAGCCTTGCATGTCCGAGGGGTGCATCTGAAGCTATACCCTCGCCGGTGTCCGATATGTCCAGAACGATTTAACTCTAATTATAAAAGAACTATTCATTTGCAAGATGTCCATAATCAATCGACTCGAGTGCACAAATGTAAGACTTGCGGCCGCGGCTTCAATTTGAAGTATCACTTGATCTGCCACGTGAGGTCGGTACACTTACAGGAGAGGAATCAGCAGTGCGACGTCTGCCTTCAGAGATTCTGCAACAAGGAATCTTTGAAGAGACATATGGTCATTCACACCGGAGAGAAAAACCACAAGTGTCAAGTGTGCGGTATGGCGTTTTTGAGGAGGAAAAATCTTAAAGATCATTTGAGGCTGCATGATATTAACTAA
Protein Sequence: MTSRTYIGFSLFLGRKTQPIEIKHEAESDSENYVASLAAEPSDGAQRRAAFRNNIATILDACTAYPFKYRKGTYLCFYCKMTFLEPERLREHNTLHHSEPDQLYKPKKYEPLKMDFSNTTCRICNVPIEDYANLKAHLTAEHGKIIDCTWGDSVLPYKLSKEEHRCQVCGRRYEMFLSFDENRETRIKLETKTTVTEKQAEDIAARKKRAYTLIECSRICPFKWMKNLYFCFYCEEHFPDPEDLRKHQSNHSTITPALLRNGRRLKKHELIKVDITDVGCKLCEDTIQNFRDLKIHLQRKHKKDIDPNSDGVLPFKVTKDSFKCALCDKISDEFKSLNHHMNIHYQNFICEQCGSGFVTPDRLRVHSFSHETGAFKCDAEGCDKVFRSKNNKNEHYAIVHMKRKRHRCPQCTETFINYFQRSKHISSIHGVKLKEFKCDLCPKVYTLSGKLGVHIRTAHMKMKRFTCEVCSWKVYSRTELKQHMLKHVAINRRFMCHDCNKTFSRGASTVPTSGRPVGRIVPLFQVAYDRSLCKPLGTISDFSKLRNKIFSATETVTFTVSRSASPVSPARSISPFQPEDTNPPAKFLLKPEPKKKSSGTRQNALTIFEFSTAYPFIFSNNKFKCFVCSQPYLDLVLLKQHMQEHTFASLKRLVNNRKENVLKVDVSDMACKLCSSPIRDLVTLKLHLKEIHAKPIDIELQDNLIPFNLNIFTVNEGYQCVICEQNFIKVRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCDKSFTTSYKRALHVRGVHLKLYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFNLKYHLICHVRSVHLQERNQQCDVCLQRFCNKESLKRHMVIHTGEKNHKCQVCGMAFLRRKNLKDHLRLHDIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -