Lhir027621.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycia hirtaria
Gene Symbol
-
Assembly
GCA_947563715.1
Location
OX387375.1:35861819-35877244[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.028 2.2 9.5 2.7 2 23 206 228 205 228 0.96
2 28 0.00091 0.073 14.2 0.3 3 21 264 282 262 283 0.93
3 28 0.0001 0.0082 17.2 0.4 2 23 320 342 320 342 0.97
4 28 0.00025 0.02 16.0 0.4 1 23 403 426 403 426 0.97
5 28 1.8 1.4e+02 3.8 0.1 1 23 442 464 442 464 0.94
6 28 0.0022 0.18 13.0 1.5 2 23 506 527 505 527 0.95
7 28 0.00061 0.049 14.7 3.5 2 23 569 591 568 591 0.97
8 28 6.3e-06 0.00051 21.0 1.3 1 23 641 664 641 664 0.97
9 28 0.00053 0.043 14.9 0.1 1 23 721 743 721 743 0.97
10 28 0.0061 0.49 11.6 7.1 1 23 754 776 754 776 0.98
11 28 0.23 19 6.6 0.8 2 23 788 809 787 809 0.92
12 28 0.0036 0.29 12.3 1.0 1 23 819 841 819 841 0.98
13 28 0.071 5.7 8.2 2.2 2 23 868 889 867 889 0.95
14 28 0.00041 0.033 15.3 4.7 1 23 900 922 900 922 0.98
15 28 5.1e-05 0.0041 18.1 0.5 1 23 930 952 930 952 0.98
16 28 8.6e-05 0.0069 17.4 0.3 2 23 972 994 971 994 0.97
17 28 1.4 1.1e+02 4.2 0.3 1 23 1012 1034 1012 1034 0.89
18 28 0.74 60 5.0 3.3 1 23 1041 1063 1041 1063 0.94
19 28 0.026 2.1 9.6 0.5 2 23 1074 1096 1073 1096 0.95
20 28 0.017 1.4 10.2 0.1 2 23 1119 1140 1118 1140 0.95
21 28 0.072 5.8 8.2 0.2 2 23 1221 1242 1220 1242 0.93
22 28 0.12 10 7.5 0.8 5 23 1252 1270 1249 1270 0.92
23 28 0.011 0.9 10.8 0.9 2 23 1281 1303 1280 1303 0.95
24 28 0.32 26 6.2 0.6 2 21 1320 1336 1320 1338 0.73
25 28 2.1 1.7e+02 3.6 2.0 2 20 1342 1360 1341 1362 0.92
26 28 0.47 38 5.7 1.9 2 23 1411 1432 1410 1432 0.93
27 28 0.0044 0.35 12.0 0.8 2 23 1443 1465 1442 1465 0.97
28 28 0.55 44 5.4 1.2 2 20 1503 1521 1503 1523 0.94

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGATTATGCCTCAAACTTGGCGATTTCTATTCTATTTTTACGGTCGACAATGCCGTACAACTGGCAGAGATGGTTATGGATTGTGCAAGGATAAAAGTGTATGAAGGAGATGGATTACCAGATAAAGTGTGTGCTGAGTGCATACAAAAACTCAGCAGTGCATACATATTTAAACAACAGTGTGAAAGAGCTGATCAGGAGTTACGGAGGAACTATGTCCCTCCACCAGGCTTCAGTATCAGTCCACCCCCTCCTAACAGACAAAGCAGTGATTCAGCATTCTCAACACACACAGACAGCTCCAACTTAAAGTCTTCATTCATTGAAAACAAAGTAACAGCTAAGAGAGGAAGGAAGAGAAGTGTCGAAAGCGATAATGCATCTGAAGTGAGCCGGGTACAAGAATATGGTCAACCCAGTACGTCGAAACGAGTAGAAGAGCTCCGTAGAACGCAGAAGCGACCAAGGCTTTCCGCTAACAACTCCAACAACTCTCAGTGTGATTCTGATTATGAAGACAATGGAGGCTCCAGCTACGTCCCTGAGACTGATAACGATTCCGACGAACCGCTCATCAAACCCAACGAAAACAAATGCGATTTCTGCAGCAAAACGTTCCGTTGGAAAAAGAGTTTGAAGATTCATACGAAGAATGTACATGGACAGAAAGAAAAGTTTGATGCGATCATTGCGGCCAGTTCTGCCAGGGCTATGAGCACACCCAAACAATCCGTCGACACATCGCTTGACGACGAGAAACAGATTTGTCCGAGGTGTGACAAGACCTTCAAACTAAAGATCATGTTGAAGAGGCACCTGGAATCGTGCACTGGAAAGTCCGCCGTGAAATCACCTATAAAAACACCTCAAAAGGAGCTGTTAATATCTTTGGAACCTATAGACGCTATACACAAAATCACTGTTAAGAAACCTACATGTGAATACTGTACGGCCAAATTTAAAACTGTTGAGAATTTAGAAAAACATCTCAGAGTTGTGCATGCAGCTGTGTTGAAGAAAGAGATCGACGCCAAAGCGGCTAAGAATTCTCCCAAACCGGGCCTGAAATTTAAGGAAGGCGTGTGCACTATTCCATGTATATATTGTCACAAGCCATTTGATGATTATTACATACACCAGTCTCACTTCAATACGTGTCCGCAGAAGGACATACGATCTGCTTACGAATGTCCGATCTGTAAGAAGGTGTCGAGTCGGAAGAATGGCTACTTTATACACATTAAGAACATCCATTTTGAACCTCGCGCTGCCAAACCTGAAGACGCTTCGGAGATTTCTTTTGAATGTCGCGTCTGTAGTAAGAAATTGCTCTCACAGGAAATGCTTGTAACGCATTTAGCGGCGCACGCGTCTAATATTGACGACGATAACGACGGCAATGATATGTACGATGATGTCGACTCCAGAACCAGTATGTTCGACGACTCTGTGTCCATGCACTCTCAAAGCATGAGCGCGGGGGGCCCGCTCAAATGCCGAGTCTGCGACAAAGACTTCAAATACCGCAAGTCGCTCCTCACGCACGAGGCAAAGCACACCGAGGACGAAATGAGAGTTAAAAACGAACCTCCCGACAAACCGTCGGCGAATTTACTCAGCGAGGCCCGACGGGGGTTCGATCTGGAATCTAGTCAAGACGACGAGGAGGCGGACGACCTTACCTGCGACATATGCGAGAAAATGTTCTCTTACAAACGTCTCCTTGACCATCACAAGAGAACTAAACACAACATGTCCTCGGGGACGAAACGAGCGAAAATAAACCTTAAAGACTGCTCGGTGAGGTGCTTGCTGTGTGACTTGGAGATGAAAGTGAGCGCTATAAATGAGCACAATCAGAAGCACATCTCCATGAATATCAAGCCGAGGAATATTTACACTTGTGCAGAGTGCGGGCAAAAGTTCAAGAGTTGTAGCAATTTGGCGAATCATATTAAACTAGTACATAGGTTGAACAAGAGCCAAGAGCAGGTGCCGCAGCAGTTCCTGGGCGTGGACCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGAACAGATCCAGAGTCACAACGGCTTTGGGGAGGTTCCGTCGCAGGCGGCTCCGACCGTGGACCTGAGCGGGTTCACGTGTCCTATTTGCGGTAAGAAGATGCCCACCCTGATCTCATTGAAGCGGCACGTCAACTGGCACTCGTACGTCGGCGCCAATCTGGAGAAGAAATACGAGTGCTTCGTTTGTAAGGAGACTTTCAAATTCAATTGTCACTACAAGATTCATATGCGGGAGCATTACCACGACACAAATATCGACCCCAAGTTACTAACATGTACCATTTGCGGCCGCAAGAGTAAACATCTCCGAGCTGCGCAAGCGCACAACAACTGGCACAAGCAGACGCGCTTCCAAAACAAAGACTACCAGTGCAGTATCTGCAAACGCGTCTTCCAATATCGCAAAGTATACCTATCCCACATGGCGATACATTACAAGAAGGGAGAGAGTGCTATGAACACAGTTGTCGGGGACATGAACTGGGGTAACGCGTCTCTCGAAGGGACTTTGACATGTAACCTTTGTGGCAAGGTCTGTTTATCTGAGACCTCTCTGAAACACCATCTCATTTGGCACAAATCGAAAACTCTTCTGTACGGAGCGAGACACGAATGCCAAATGTGTCAACTGCAATTCACTAACAAGCGTCATCTAGAGCTTCATATTAGATCGCATTACGAAGACGACAACGGCCCATTCAAGTGCAATGTTTGCGGGAAGGGTTACATAGACGAAGAGTATATGAAGCGGCATCAAAAAGGACACAATTTCGACCACTCGTCGCATAAAAAGCGGCTCGAGAAACTTCGGAAAGGCAAAGTGAAGTGTCCGATTTGCCCGCGCTACTACCCCGATCTAGTGCATTTGATTCGGCACTTGCGGCGCACGCACCCCGAGTCGAAGATGATCAAAGAAGACCCCGACGCACCTCCGCCCGCGTACTTCTCTTGCAAGCTGTGCGCTAAAGTTTTCTTAGATGAGCCGCGATTGAAAAAACACGAAGATGCCCATTTGCGTAAGCCGAATTTCTTCCGGTGCAAGTTCTGCGGCAAGAAGACTATTTCCCTCAAATCGCACAACTTACACATCAAGGCGCATCTGACTACGAAGCATGTGGATAATCCACTGAAGTGCCCGCAATGCGAGGAGGTGTTCGTCCTTGGATACGCGCTACATCACCATCTAAGAGATGTACACGGAGTAAATGAGACTTGGATAGCGGAACGAGCCGATGTGCCACTCGAAGGGCCTCTCAAAGAACTCCAGTGCGCAGTTTGCCTGAAAGTGCTGGCTAGTAAGGGCAACTTTGAACGCCATCTCGATTACCACAATTCCTTGCGTTGTAACTACTGTTTCGACTACTTCGGCGGGTTGCGGTTTCTGGAGGGACACTTGGCGTTTAGCTGCGACAAGAAGAAATTAGTCGGAGATACGGAGGTGCACCCGCGACGGATCAAGTGCGAGTTGTGCTACAAGCCCTTCCACCTACAGGTGAAGCTGGACTGCCACCTGCGCACGCGTCACGGGGTGTGTGTGGATAGACGCGCGGGTGCAGCCAGCGAGGACACCGTCTGCGACTACTGCTTCCGGACCTTCGAGAACGAGTTCGCGCTCGCTGGACACAAGATTTACCACCGCTCCATAGGATACTACGGCTGCATCTACTGTCCGAGGAAGTTCAACACCCGGGTCGCTTACAACAGGCACAAGACGCAACATCTGTACACGATCAACAACGACGACCCGACTAAGTGCGAACACTGCGACGAGAAGTTCGTCGTCTTCCGGGACATGATCGAACACATGAAGGAGGAACACGGAGACGACAAGGAGTGGATCATCGAGCCGAAGGAGTCCGTCGAAGAAAAGTGCCCCGTGTGCAACAAAATGTTTTACAACCTGCCGCGACACCTGCAGTACCACGAGGATAACAAGTGCAAGAAGTGCAACGAATACTTCTACTCGCGACTCGACTACGATAACCATCTGTGCGCGATCGAGAGCGACGCGGAGGAAGAGACGGCCGGCGGCGACACCCCCGCGCGTACCTACGAAGAGTGCACGTTCTGCTTCAAACCTATCACGAAGAAGGATTCCAAAAAGAAACACGACATTTTACACAAGACGTCGGGCTCGATCTCGTGTCGCTTCTGCCATCTCAAGTTTAAAACCATCGACGCGTTTAACATTCACGCGTTCTCCCATCGCAGCCGGAAGTACGTAAAGCGGCCGATCAAGTGTCGAGTGTGTAAGGAGCGGTTCGTCAAGTACGGTCCTTTCATGAAACATATGAAGACGGCGCACAAGTCGGTGAAGAAGATGCACTACCGAGCGGCTGTGAAGGCTGAGAGATGCGTCGTATGTGGAGAGTACTTACCCAACTTGCACAACCACTACCGCGCGCATCTCGCCAACCGCTGCCAGACCTGCGCCAAATACTTTGTATCGTCGCGACTGTTCGCGAGGCACGTGTGCGACAAAGAAGACGCCGATCCGTCCAAAGTGTTCACCTCTGACGCGGATCTGCCCTCCCTCATTTCCTCCTACCATCCGAAAGACGAGAAGGACGATGAGAAGTTTTACGGCTACACCGATGATGAGGAAGAACCGGACCCGGAACCGGAAGAGGCTCCCGCTCAGCCGAAGCCGAAACCGGTTAAAACTTACAAACCGAAACGGCCTCAGATCACGGAGCTGCCTAGAGCCCAGCCGATAGACAGCCAGCTGGCTGAGGACGAGCGCAACCTGCACATGATGGTCCAGTCTCCGATAATTTCCGACGTGCTCTCTCTATACCAGAAGCAGGAGTTGGATGTGGAGTCAAAGAGCCAGTCGAGTCAGGCCGACGATGTGGTCGACCTCAGCGACGATTCTCTGGACGCGACGGATTTGAACGCGCCCGTCGTTGTCATCGACGATTCTAGTTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARIKVYEGDGLPDKVCAECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFIENKVTAKRGRKRSVESDNASEVSRVQEYGQPSTSKRVEELRRTQKRPRLSANNSNNSQCDSDYEDNGGSSYVPETDNDSDEPLIKPNENKCDFCSKTFRWKKSLKIHTKNVHGQKEKFDAIIAASSARAMSTPKQSVDTSLDDEKQICPRCDKTFKLKIMLKRHLESCTGKSAVKSPIKTPQKELLISLEPIDAIHKITVKKPTCEYCTAKFKTVENLEKHLRVVHAAVLKKEIDAKAAKNSPKPGLKFKEGVCTIPCIYCHKPFDDYYIHQSHFNTCPQKDIRSAYECPICKKVSSRKNGYFIHIKNIHFEPRAAKPEDASEISFECRVCSKKLLSQEMLVTHLAAHASNIDDDNDGNDMYDDVDSRTSMFDDSVSMHSQSMSAGGPLKCRVCDKDFKYRKSLLTHEAKHTEDEMRVKNEPPDKPSANLLSEARRGFDLESSQDDEEADDLTCDICEKMFSYKRLLDHHKRTKHNMSSGTKRAKINLKDCSVRCLLCDLEMKVSAINEHNQKHISMNIKPRNIYTCAECGQKFKSCSNLANHIKLVHRLNKSQEQVPQQFLGVDLADFCEVVVTKAEPLEQIQSHNGFGEVPSQAAPTVDLSGFTCPICGKKMPTLISLKRHVNWHSYVGANLEKKYECFVCKETFKFNCHYKIHMREHYHDTNIDPKLLTCTICGRKSKHLRAAQAHNNWHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGDMNWGNASLEGTLTCNLCGKVCLSETSLKHHLIWHKSKTLLYGARHECQMCQLQFTNKRHLELHIRSHYEDDNGPFKCNVCGKGYIDEEYMKRHQKGHNFDHSSHKKRLEKLRKGKVKCPICPRYYPDLVHLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDEPRLKKHEDAHLRKPNFFRCKFCGKKTISLKSHNLHIKAHLTTKHVDNPLKCPQCEEVFVLGYALHHHLRDVHGVNETWIAERADVPLEGPLKELQCAVCLKVLASKGNFERHLDYHNSLRCNYCFDYFGGLRFLEGHLAFSCDKKKLVGDTEVHPRRIKCELCYKPFHLQVKLDCHLRTRHGVCVDRRAGAASEDTVCDYCFRTFENEFALAGHKIYHRSIGYYGCIYCPRKFNTRVAYNRHKTQHLYTINNDDPTKCEHCDEKFVVFRDMIEHMKEEHGDDKEWIIEPKESVEEKCPVCNKMFYNLPRHLQYHEDNKCKKCNEYFYSRLDYDNHLCAIESDAEEETAGGDTPARTYEECTFCFKPITKKDSKKKHDILHKTSGSISCRFCHLKFKTIDAFNIHAFSHRSRKYVKRPIKCRVCKERFVKYGPFMKHMKTAHKSVKKMHYRAAVKAERCVVCGEYLPNLHNHYRAHLANRCQTCAKYFVSSRLFARHVCDKEDADPSKVFTSDADLPSLISSYHPKDEKDDEKFYGYTDDEEEPDPEPEEAPAQPKPKPVKTYKPKRPQITELPRAQPIDSQLAEDERNLHMMVQSPIISDVLSLYQKQELDVESKSQSSQADDVVDLSDDSLDATDLNAPVVVIDDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00634735;
90% Identity
-
80% Identity
-