Lhir026167.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387375.1:5704659-5707479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6e-07 4.8e-05 24.2 1.0 3 23 136 157 134 157 0.94 2 14 0.0072 0.58 11.4 0.5 2 23 164 186 163 186 0.96 3 14 0.0015 0.12 13.5 2.6 2 23 193 215 192 215 0.93 4 14 3.1e-06 0.00025 22.0 0.3 2 23 223 245 222 245 0.96 5 14 0.00074 0.059 14.5 1.6 1 23 251 274 251 274 0.95 6 14 0.0002 0.016 16.3 0.8 1 23 281 304 281 304 0.97 7 14 2.7e-06 0.00022 22.2 1.3 2 23 310 332 310 332 0.95 8 14 0.00038 0.03 15.4 4.1 1 23 346 369 346 369 0.96 9 14 0.005 0.4 11.9 0.5 5 23 382 401 379 401 0.93 10 14 9.2e-06 0.00074 20.5 0.4 2 23 407 429 407 429 0.97 11 14 0.16 13 7.1 3.5 2 23 437 459 436 459 0.91 12 14 7.1e-06 0.00057 20.8 2.9 1 23 464 486 464 486 0.98 13 14 0.016 1.2 10.3 0.8 1 23 492 515 492 515 0.96 14 14 1.3 1.1e+02 4.2 0.7 2 22 620 639 619 642 0.87
Sequence Information
- Coding Sequence
- ATGGAGCAAGAAAAATGTGTTAAACTTGATATTGTTAAAATTGAAGTAAAGGAAGAACCTATAGACAGCGAATATGCCAACAGTGAACAAAGTCTTGCAAACTCTTATAAAAATGAATTTTATAATATAAAAACAGAAAAGGATATAAATGACCGGAAACTGAGCACAGGGCACTCTCAAATCTCCAAAAATGAAAACACACAAGTATGCATGGAGAGAAAAGAAAACACAAAAGTGTATGTTGAGACTAATGAAAACATACAAGCTTATGTAGAGGACAATACAAACTCACAAACAAATTATACACAGAGAGTTCTAGAAACACAACAAAGTTTTTCAGAACATTCATACCCTCAAACAAGCAAAGGAAAAGTAAATGGAAATGGGAAAATCAATCGTGTAAATTGCACACAGTGTGGAAAATCATTTAAGAACAGAGCTAATTTGACAAATCATATAAAATTTGTGCATGCTGTAGATCAAACAGTGGAGTGTAAAGAATGCATGAGGAGTTTTAAGTCTGTGTTATATCTCCGATCTCATATGAGCTCGGTGCACGCTAAGACTGAGATAGTCCGATGTGATCACTGCGATAAAGTATTTTTAAATAAGAAAAAGTTGAATAACCATATATATTATACGCACAGACAACCGGAGGAACAAGTGTCATGTGAATTGTGCTCGAAAACATTCAAAGGGCCGTACAATTTGAGAATTCATATGAGGTATGTCCATCCGCAAGGCGACCCACATCCATGCCTATTTTGCTACAAAACATTCAAAGTCGAAATGCTTCTGCAACGACACATGAAATGGGCCCACCCCAACGACGGGATGACTTATAAATGCCAGGAATGTAACAAGATCTTGTCTTCTCTGGAGGGATACAAAACGCACATGAAAAATGTACATCTATTCAACAGAGCTACCTGCGATATCTGTAAACGTACATTCAAAACAAAGAACTCTCTAGAGAGACACATGATTAATGTCCATAATGGAAACAGATCTGTAGAAACTTATGTCCCGAAAGAACACACATGTCAATACTGCCAGCGCACATTTAATAATACGACTTCGTTATTTTGGCATATAGAAAGATTTCATGCTCAAGTACAGAAATTGCCAAATAATTTGTGTATTATATGCAGCAAAGAGTTTTCTGATTACGCAGCGCTGCATAGACATTTGATGTCAGTGCATTCATTGGAGACTGCTACATGTAACATATGCTTGAAAGAATTTAAATCGCCCATCAATCTACAAAATCATATAAGGATCACACACGCGCCCCCCGAAGCGACACAAAAATGTGACACCTGTCAAAAAGTATTTAAATGCCAGCTGCATTTACGTATGCACGTGCTAGCTGTACATGATGGCGGTCAATACCCGTGTGACATCTGTCAGAAAACCTTTACTTCAACTAAATATTTGAACAAGCACAAAAAATCGCATTTGCAATCGCGTAACTTTCAGTGCGACGTATGTTTAAAAATGTACAAAAACATTAATGCTGTCAACAAACATAAGAAACAAGTTCACAATGGCGTCAAATGCGCTATTTGTAATTTTAAACAGGCAAATATAGACGATCATTTGAAGAGATGTCATCCGGATGTTATTCTGGATCTAACTTTGAATTCTGTGAATAGTGAGAAACACACTATAGACTCTGTGAACATTGAAAATCAGACTATGGCCTCTGTAAAAATTGAGAATGAGATTATGGACTCTGCGAAAATTGAGAATCAGACTGTAGATTCTGTGAAACTTGAGACTCAGATTGAGGACTCTGTGAAACTCGAGGCTCAGACTGAGGACTCTGTAAAAAGTGAGAAGGAAATAGATGAAATAAAATGTAGAGTGTGTGATAAAATAATAGATAGTTCAGAATATAATGAGCATGTAAAAAATTGCGGGCATCCGCCTATACTGGAAGTAACCATTAAAATGGAAATAGAAGATAATTAA
- Protein Sequence
- MEQEKCVKLDIVKIEVKEEPIDSEYANSEQSLANSYKNEFYNIKTEKDINDRKLSTGHSQISKNENTQVCMERKENTKVYVETNENIQAYVEDNTNSQTNYTQRVLETQQSFSEHSYPQTSKGKVNGNGKINRVNCTQCGKSFKNRANLTNHIKFVHAVDQTVECKECMRSFKSVLYLRSHMSSVHAKTEIVRCDHCDKVFLNKKKLNNHIYYTHRQPEEQVSCELCSKTFKGPYNLRIHMRYVHPQGDPHPCLFCYKTFKVEMLLQRHMKWAHPNDGMTYKCQECNKILSSLEGYKTHMKNVHLFNRATCDICKRTFKTKNSLERHMINVHNGNRSVETYVPKEHTCQYCQRTFNNTTSLFWHIERFHAQVQKLPNNLCIICSKEFSDYAALHRHLMSVHSLETATCNICLKEFKSPINLQNHIRITHAPPEATQKCDTCQKVFKCQLHLRMHVLAVHDGGQYPCDICQKTFTSTKYLNKHKKSHLQSRNFQCDVCLKMYKNINAVNKHKKQVHNGVKCAICNFKQANIDDHLKRCHPDVILDLTLNSVNSEKHTIDSVNIENQTMASVKIENEIMDSAKIENQTVDSVKLETQIEDSVKLEAQTEDSVKSEKEIDEIKCRVCDKIIDSSEYNEHVKNCGHPPILEVTIKMEIEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -