Lhir023285.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:8937189-8941885[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.061 4.9 8.5 5.3 2 21 108 127 107 128 0.92 2 20 0.36 29 6.0 3.0 2 23 133 154 133 154 0.95 3 20 6.1 4.9e+02 2.2 5.3 2 23 160 181 159 182 0.93 4 20 0.02 1.6 10.0 1.3 1 23 187 209 187 209 0.91 5 20 3.3 2.7e+02 3.0 0.1 6 21 216 231 216 232 0.93 6 20 0.0002 0.016 16.2 0.4 1 23 244 267 244 267 0.93 7 20 1.1e-05 0.00087 20.2 1.9 1 23 273 295 273 295 0.98 8 20 0.046 3.7 8.8 1.2 5 23 305 323 303 323 0.97 9 20 0.018 1.4 10.2 1.9 1 23 329 352 329 352 0.94 10 20 0.001 0.081 14.1 0.1 3 23 362 383 361 383 0.96 11 20 4.1e-05 0.0033 18.4 0.4 2 21 493 512 492 513 0.94 12 20 0.11 9 7.6 0.0 3 23 520 541 518 541 0.95 13 20 0.024 2 9.7 1.3 2 23 547 569 546 569 0.94 14 20 4.4e-06 0.00035 21.5 3.5 1 23 574 596 574 596 0.98 15 20 0.11 9.2 7.6 4.2 2 20 600 618 600 620 0.94 16 20 6.9e-06 0.00056 20.9 0.5 1 23 646 669 646 669 0.95 17 20 0.012 0.94 10.7 0.9 1 23 675 697 675 697 0.88 18 20 0.069 5.6 8.3 0.1 1 23 703 725 703 725 0.97 19 20 0.0049 0.39 11.9 0.7 1 23 731 754 731 754 0.94 20 20 5.1e-05 0.0041 18.1 0.2 2 23 761 783 760 783 0.94
Sequence Information
- Coding Sequence
- ATGCGCACAGCTCCCCGCTGCGCGGCGGTAATCGAGGAGACCAACCTACCAGCGAGTCTGTGCCGGAATTGCACTGAAGACATCATTAACGCGGTCACGTTCAAGCAATTGTGCCTACAGTCGGCTCACCACTGGGACGAGGCAACAGACTACATAAAAACCATTAATGAACCTGCAGACACAGATAAAACATTCTTCATCTTCTATCCTCAAGAAAAATCAGTTTACAATATACCAGAACCCTCGCCCACTATAGAAACCGCCATAAATCTACTGAATAAACCAAAACGGATAAAAACCAAAAAGAAACGCTTCTCATGCAGTTGCCCACATTGCGGTAAAAAGTTCAGCTGCTTGGAATATTTGAATGAGCATTTAAAGTTTACAGTGCGGAGGTACTGCTCCGAATGCGGTACAGGTGTTCATAAAAAGCATTTAGCTCAACATTTATCTCGAAACCATAAAATAGAAGTTTTGGAATGTGACTCTTGTCATGATATTTTTAAGAATCATTATGAAGCACAGAGGCATCGGGTGAAGCATCACGGACTTGGTACGCACAGCTGCTCCTTTTGTGGAACTGGGTTTCCAAATGAACGGGGTCTCAGATCACACAACTACTTGCACGCCCTCTTTCACTGCCCCTGCGGTGCTAGCTTTGAAAACGCTCGATGCTATAAATATCATATAACCACCTGCACGCCGAAGACGCAAGAAATTGCACCTAACTTCGAATGCGATCATTGCGGAGTTGTATACGATAGGAAACCATCCCTACGCATACATATCGTTCAAAAGCATCTACACGTACTTCCTTTTGTTTGTCAAATCTGCGGGAAGCGTACATCAACACTTGCCCATTTAAAATCTCATGAAAAAACACATGAATCCGAGCGGAAGGTTCTTGAATGCCATTGTGGTGCTAAATTCCGTACGGAATTAGGATATAAACTGCACATGAGAATCCATTCAGGAGATAAGCCTTACAAATGTGACCATTGTGGAGAAAGTTTCCTGTCCGCATCCAGAAGATTAGATCATATCAAAAGACGGCACCAATCTTCAAAAGAATTGCCACACGGTTGCAGCGAGTGCCCTGCTAAATTCATAAGACCATGGGAACTTAAAAAGCATTATTTGAATGTCCACGGATCGGTTATAATAGAAGACGATAGCTGTCCAATCGGCGCGTGTGTTGGATGTGCGAGCGCTGCGCTCGCAGCGCAAGAATTCCGCCTCTTTGTGAGGAACTCTGAAAAGCTCTGGTATAAAGCCGTCACCAACCTCACCAACTTAGAAAATGAGCACGAAGATCGTGTCAAATCAATCTGTGCCTTCATCACTCCCATCGACTTAACCATAGTAACCGCCAAAGATTACACCGGAGGCGAACCTGAAGAAATTGTAAACCGTTCCAAAACTACCTTCAAAAAAACTAAACGAAAAGCTAGACGCCACCACTCGGGACCTATGAGCACATGCCCTGATTGCAACAAGACTTTCACTAGCCCATTCTTTCTACAAGAACATTTGAAGAACAATGGACCGAAAACTGCTTGCGTTGTATGTGGTGTTGTAGTAACTAGAGGTCAAGAGTTGATGGAACATATGGCGTCCGATCACAAAGAACTGTTATCGATGTGTCCACAATGCCCTTGCTTATTCAAAAATGATGAAGAATTAAGCAAGCATTTGAAAGACTCCCACGGAACAGGCGTTTACACTTGTACAGATTGCGGTAGGACTTTCCCAAGGAAGTCTACGTTCGAGCATCATTCACAAATGCACGTAGTACGGACTTGTAGAAATTGTAACAGACAGTTCACAAACAGAAGTTGCTATAGAGAGCATAGGACTCAGTGCGAACCTGACGCTAAACCCGATAGAAATACCATGCCTAAGAATAGACGGTCCAACATTCGAGATCCTGCAGTGTTTATATGTGATTATTGTAATAAAACATATACGTCGCGACCCCAATTGAAAAATCATATATTGTGGATACATATGGACCATAGACCACATCAGTGCCAGTGGTGTGGAAAGAGGTTTTTCACTCAAGCGCGAATGGCAGAGCATTCCGTGGTGCATACGCGCGCGCGTAATTTCGAATGCGATATCTGTGGCGCAAAACTGGTTTCCAAGATGGCTGCCGTATACCACAGGCGGCGGCACACAGGCGAAAAACCATACAAATGTGAGGATTGCGATGCTACCTTCATTTCTTCCTCAAGGAGACTCGAGCATGCTAAACGAAAACATAATAAAGGTACGAGAATACAATGTCCTTTGTGTCCGAATAACTTTGTGCGGAAAAGTGAGCTTAAACGGCATGTGGATAAGGCTCATGTCACTGTTGATGATACAATAGCGGACTGGACGTTACCGGAGCAGGCCAAATTGGAAAGCGTGGCGACGATATAA
- Protein Sequence
- MRTAPRCAAVIEETNLPASLCRNCTEDIINAVTFKQLCLQSAHHWDEATDYIKTINEPADTDKTFFIFYPQEKSVYNIPEPSPTIETAINLLNKPKRIKTKKKRFSCSCPHCGKKFSCLEYLNEHLKFTVRRYCSECGTGVHKKHLAQHLSRNHKIEVLECDSCHDIFKNHYEAQRHRVKHHGLGTHSCSFCGTGFPNERGLRSHNYLHALFHCPCGASFENARCYKYHITTCTPKTQEIAPNFECDHCGVVYDRKPSLRIHIVQKHLHVLPFVCQICGKRTSTLAHLKSHEKTHESERKVLECHCGAKFRTELGYKLHMRIHSGDKPYKCDHCGESFLSASRRLDHIKRRHQSSKELPHGCSECPAKFIRPWELKKHYLNVHGSVIIEDDSCPIGACVGCASAALAAQEFRLFVRNSEKLWYKAVTNLTNLENEHEDRVKSICAFITPIDLTIVTAKDYTGGEPEEIVNRSKTTFKKTKRKARRHHSGPMSTCPDCNKTFTSPFFLQEHLKNNGPKTACVVCGVVVTRGQELMEHMASDHKELLSMCPQCPCLFKNDEELSKHLKDSHGTGVYTCTDCGRTFPRKSTFEHHSQMHVVRTCRNCNRQFTNRSCYREHRTQCEPDAKPDRNTMPKNRRSNIRDPAVFICDYCNKTYTSRPQLKNHILWIHMDHRPHQCQWCGKRFFTQARMAEHSVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCDATFISSSRRLEHAKRKHNKGTRIQCPLCPNNFVRKSELKRHVDKAHVTVDDTIADWTLPEQAKLESVATI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -