Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387388.1:8466048-8471350[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1 84 4.6 0.7 5 21 193 209 190 210 0.92

2 12 0.0016 0.13 13.4 0.2 2 23 233 254 232 254 0.97

3 12 8.2e-05 0.0066 17.5 4.0 1 23 267 289 267 289 0.98

4 12 0.00012 0.0095 17.0 1.6 1 23 297 320 297 320 0.97

5 12 0.0003 0.024 15.7 0.5 1 23 328 350 328 350 0.97

6 12 0.051 4.1 8.7 1.6 3 23 357 377 356 377 0.97

7 12 3.8e-07 3e-05 24.8 0.6 1 23 383 405 383 405 0.96

8 12 1.5e-05 0.0012 19.8 0.8 1 23 411 433 411 433 0.99

9 12 1.5e-06 0.00012 22.9 0.3 1 23 439 461 439 461 0.98

10 12 0.00024 0.019 16.0 0.5 1 23 467 489 467 489 0.99

11 12 8.4e-06 0.00067 20.6 4.1 1 21 495 515 495 517 0.96

12 12 8.5e-06 0.00069 20.6 0.1 1 23 523 545 523 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1	84	4.6	0.7	5	21	193	209	190	210	0.92
2	12	0.0016	0.13	13.4	0.2	2	23	233	254	232	254	0.97
3	12	8.2e-05	0.0066	17.5	4.0	1	23	267	289	267	289	0.98
4	12	0.00012	0.0095	17.0	1.6	1	23	297	320	297	320	0.97
5	12	0.0003	0.024	15.7	0.5	1	23	328	350	328	350	0.97
6	12	0.051	4.1	8.7	1.6	3	23	357	377	356	377	0.97
7	12	3.8e-07	3e-05	24.8	0.6	1	23	383	405	383	405	0.96
8	12	1.5e-05	0.0012	19.8	0.8	1	23	411	433	411	433	0.99
9	12	1.5e-06	0.00012	22.9	0.3	1	23	439	461	439	461	0.98
10	12	0.00024	0.019	16.0	0.5	1	23	467	489	467	489	0.99
11	12	8.4e-06	0.00067	20.6	4.1	1	21	495	515	495	517	0.96
12	12	8.5e-06	0.00069	20.6	0.1	1	23	523	545	523	545	0.98

Sequence Information

Coding Sequence: ATGGATGTAGACAAGAATTTTGATAAAATATGTCGAGCGTGTCTTTCTGAATCCGGCAATATGAAGTCGCTCTATGCAAAACTTGAAAGTGGACAGAAATTGTTAGATTTGCTCATAATTACGGCAAGTATAGAAGTTACTAGCGAAGATGCACTTCCCAAACAGGTTTGTGGTGATTGCGAGTCATTTTTATACCAGGCTGATGAATTTAAACGCCGTTGCAAAGAATCTGATATGATTCTAAAAAATGTCTGTCCAAACTCCTTCGATCCGAATTATGTGAAAACTGACGAATTTACTGATAAAAATGAAAGGAAACTACCAAATTCCAGACTCGATAAACTTAATAATTATGACGCTGAAATAGAAAAGCCGGATTTTTTAAGTTTATTCCGTAATACAGATGTTAAATTTAAAAAGTTAGATTCTTCTGGAATAGATGAAAAGCATTGTGTGAAAACAGAGGTAAATATGGAATTAGAAAATTTGGATTATGAAGACAATTTTGACGATAGAGAAAATTCAGAAATACCCGCAGAAATTGAAGAATTGAAAGAAGTAACAACATACAAATGTGTATGCAGTGAAGAGTTTAAAAGTAAAAAGAAGTTTGACGAGCATATGAAAAATAAAAACTGTGTAAAGAAACGAAGAAAAAAAGACACAAATAAAATTCGTATTCCGATTAACAATATACCATGTCCGAAATGTAATTTATCATTTGACACAATAAATAAATGGACTGACCATCAATTGACACACAAAAAGGCTAAAAATGAACAAGAAGAGTTACCTCAATTTGAATGCTCGTTATGTTTGCGGAAGTTTAAAACAAAGAAGACGTTATCAAAACACATAAAAAGACATGAAGCCAAAGACAATGTTAAATATGTATGCTTCAAATGCAAGAGAGAATTTAAATATAAAGCATTTTTGGAAAGTCATATGTTATCTGTACATATGAATGGTACCAGTGACGGTTTCAATTGTGAAAAATGTGCAGAAAAATTCCCCACACGGAAAACTCTAGAAGAACATATGGACAGTCATAGGAAGAAGAAGAATGCTTGTCCGTTCTGCAATAAGTCATTCCTTATGGTCTGCACATTGAAGGATCACTTACGGATACATACAGGTGAGAAACCATTCCTGTGCTCTATATGCGGCAAGGGGTTCAGCCAGAAGAACAACCTGGCGCAGCACGTGAGACGTCACATGGGAGTCAAGCCGTACAAGTGCAACACCTGTAGCATGATGTTTGTATCAAAAGGAGAACTTGACTCTCACATCCGCAAGCATACCGGAGCACACCCGTTCATCTGCGACGAATGCGGCAGCGGTTTCACCACCTCGTCAGCTCTGGTCAAACACCGACGCACCCACACCGGTGAGAGACCTTATTCGTGCGACTTGTGCCCCATGAAATTTGCAGCTACGGGCACTTTGAAAAATCACAGAAGAACGCACACAGGTGAGCGTCCGTACCAATGCAGTCATTGTGAGAAATCTTTTGTGCAACGGTCAGACTTGATTTCTCATATCAGGTGTCATACGGGGGAGAGGCCGTTTGTTTGTCCTCAGTGTGGCCAGGCCTTTAGGAAGGCAGCTGCGATGAAGACTCACCTTAAAATGCATACGAGGGAGAATGTTGGTTTGATGAATATTCAGTGTGACGGACAAATGTAG
Protein Sequence: MDVDKNFDKICRACLSESGNMKSLYAKLESGQKLLDLLIITASIEVTSEDALPKQVCGDCESFLYQADEFKRRCKESDMILKNVCPNSFDPNYVKTDEFTDKNERKLPNSRLDKLNNYDAEIEKPDFLSLFRNTDVKFKKLDSSGIDEKHCVKTEVNMELENLDYEDNFDDRENSEIPAEIEELKEVTTYKCVCSEEFKSKKKFDEHMKNKNCVKKRRKKDTNKIRIPINNIPCPKCNLSFDTINKWTDHQLTHKKAKNEQEELPQFECSLCLRKFKTKKTLSKHIKRHEAKDNVKYVCFKCKREFKYKAFLESHMLSVHMNGTSDGFNCEKCAEKFPTRKTLEEHMDSHRKKKNACPFCNKSFLMVCTLKDHLRIHTGEKPFLCSICGKGFSQKNNLAQHVRRHMGVKPYKCNTCSMMFVSKGELDSHIRKHTGAHPFICDECGSGFTTSSALVKHRRTHTGERPYSCDLCPMKFAATGTLKNHRRTHTGERPYQCSHCEKSFVQRSDLISHIRCHTGERPFVCPQCGQAFRKAAAMKTHLKMHTRENVGLMNIQCDGQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00926833;
90% Identity: iTF_00926833;
80% Identity: -