Lhir023693.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycia hirtaria
Gene Symbol
-
Assembly
GCA_947563715.1
Location
OX387387.1:18223129-18249612[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.13 10 7.5 0.6 1 23 422 444 422 444 0.94
2 13 0.0017 0.13 13.4 7.6 1 23 462 484 462 484 0.98
3 13 1.9e-06 0.00015 22.6 3.2 1 23 490 512 490 512 0.99
4 13 9.3e-05 0.0075 17.3 1.5 1 23 519 541 519 541 0.99
5 13 0.00017 0.014 16.5 0.7 1 23 547 569 547 569 0.93
6 13 3e-07 2.4e-05 25.2 1.8 1 23 575 597 575 597 0.99
7 13 1.4e-05 0.0011 19.9 1.1 1 23 603 626 603 626 0.96
8 13 7.6e-06 0.00061 20.7 0.9 1 23 632 655 632 655 0.96
9 13 0.0011 0.091 13.9 0.5 2 23 662 683 661 683 0.97
10 13 7.7e-06 0.00062 20.7 1.8 1 23 689 711 689 711 0.98
11 13 0.00064 0.051 14.7 0.4 1 21 717 737 717 738 0.96
12 13 0.0059 0.47 11.6 0.5 3 21 740 758 739 759 0.94
13 13 0.0016 0.13 13.4 1.7 1 23 782 806 782 806 0.91

Sequence Information

Coding Sequence
ATGACGCATGTGCCAGCCATCGCCCTCCTCAACCATATGTTAGGGAAGAGGGCGGCACGCCACACGACGCCGCCGCAAGAAGGAGCCTTCGATGGTGAGCATGAATGCTCAAGAATGAATATTATAAAGATGGACATGTGTGAGGAATACAATACTACAATACACACTACCATACGGAGTACGGTCAAACCGAGTAAAGAGGAAAAAACTATGGGCACTATAGTGGTCCCCGCGTCGAAGCTGGTGCCTGTTCCTCCTGACTTCCAGCTGAATTTCAGCCGTCTGCCGGCACTTGGAGCTATATCTAAAGCCAACATCATCACTAAAGCTAAGACTCCATCGATTAATCTGAAAGTGACCATCGGTACCTCAATACTCACTCAAACTGTCAACACGTCAACTGTCAACATTGCTGTCACACAGACCACAGACTCCAATGTTATGTCAACTGTCAACAGTGACATTTCTAAAGTATGGGACATCAATATTGTTCCACAAGAAATATTTTCGACAAATGAAGAAACTACTCCAAATGACAAGGGTCATGACGATGATGAGTCGGGAAAAAGTGGTGATGGGAACGATGAGAACGGTGATGAGGAGGAACGTGAAATGGAAATTGATGAAGACTGCAACATGGCCGTGGTGCCTGTCGCGTCAGATAGCCGGGACCCCTTCAGTAATATAAAGACAGAAGATGAACAACTGTCCGAGTATACGGAGTATATAACTATAACGGAGGGCACGGGCGACGCCGACGGCAACTACGTGTTTGGGAAATTCAAGGTTTACGAGAATGGAGATGATGATGAACAGCACACGATAGTGGTGGAGGGGGACGACGCCTCCGTTCTGGAGATGATGAGCGGACAGAAGGTGATCTACGAGAAGGGTGGTCTTTCGCTTCTGATGGCGGAGGACGGCGCGTCGCACGAGGCTCCAGACGACGATGATGATGGACAAGATTCGAACGAGGAGTCTCAGATAGAACTGCAGGTGTCTGGTGACGAAGAGACGGCCAACGCGATTATAGCGGCCGCCCAGGAACAAGGCGGAGCCTTCATAAAAGTGGAATCCGGTGAAATGTACCGCGTGAAATCCGTCCAGAGCACTGGAGACTCGTCCAGCTTCGACGTGGAGAGTCTTGTCTCCAAGCAAGGGGACCAGTTCCGGTGTAACCTGTGTCTGCAGCGGGAGGAAGAGACGTTGCTAGAAGCGGCCCCGATGATGCAGCATCTGAAGTCGGTTCACGACGCCAAGATGTACCTGTGCCAGTTCTGCGGCCGCGGCATGAGGAAACGCTCCGAGTACAACACGCATTTAGCGGAACATTCGAGCAAGGCGTCGCCCGCGAGCAGCAAGCCCGGCTCACAGAAGCGTCTGCACGAGTGCTCGCTGTGCAGCAAGTGTTACACGTCGCGCACGCTGCTGCACGAGCACATGAACACGCACACGGGCACGCGGCCCTACCGCTGCGACCACTGCCGCAAGGCGTTCGCGAGCAAGTACACGCTCAACGCGCACCTCAAGACTCACCAGGTGCGCCCTCGTCCGTACAAATGCGAACAGTGCGACAAGAGTTTCCTCTCCGTTCAGAACCTGAGACAGCACGTGAAGACGCATTCCGGGGTCAAGGACTTCATCTGTAAATTCTGCAACAAGGCGTTCGGCACCCAGCACAACCTGGAGATCCACGGCGTGGTGCACACGGGCGCGCGCCCCTACCGCTGCCACTACTGTGACAAGGCGTTCGCGAGGCGAGCCGAGCTCGTCGACCATCGGAGGACGCACACCGGCGAGCGTCCGTTCGAGTGCGAGGTGTGCGGCGCGCGGTTTGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGACACGCATCTACACGAGAAACGCTACCAGTGCGCCGACTGCCCCAAGCGGTTCAAACGGAGGAGATTATTGGAGTACCACATAAAGGCGTCGCACACGGGCGAGCGGCCGCTCAAGTGCGACGTCTGCGCCGCCACGTTCGTGTACCCCGAGCATTACAAGAAACACGTGAAGATACACTCCGGCGTCAGGCCCTTCGTCTGCGAGATATGCGGCAAGTCGTTCAACACTCGCGACAATCGCAACACGCATCGATTCACTCACAGCGAGAAGAAGCCATACGAGTGCCTCACCTGCGGTCACTCCTACATGAGGAAGCGGCTGCTCATAGCGCACATGAACTCGAGCTGTCTCACCTGCGGTCACTCCTACATGAGGAAGCGGCTGCTCATAGCGCACATGAACTCGAGCGTGAGTACCAGTATACTATACAGTATACTATACGTGAGTACCGGTTTACTATATAGTATACAACACGAGTGTCTCACCTGCGGTCACTCCTACATGAGGAAGCGGCTGCTCATAGCGCACATGAACTCGAGCGGACACTTGGCTGAATCGATAGTGGTGAATCAACCGAGAGTCACGAGAGTGCACAAAACGGAGGCGGGCATAACGACGCTAGTGGAAGTCGACGATCCGCCGGAAATGTTGGACGCCGACGAGAAGATCGAAGCTATATTCCGTACGTCGGGCAAGTTGGAGTCGCTCGACAAATCAGCTATCATCACCAAGATAATGGAGCACGGCGGTGATGAGAAACTATTCGTTGAATGCGATAACTTGGAGACAGAAAACGAGGATGGCGCCATCTTAGAACCGGTGAACGGAGCAACAACGGAGGGACAAACTACACATTACGGTACCGACGAAAATGGCGCCGTGTTAAGGTTGATACAAGTGAAACTGCCGGACGGAAACGACGGATGGGTCGCCTTTAACGACTGA
Protein Sequence
MTHVPAIALLNHMLGKRAARHTTPPQEGAFDGEHECSRMNIIKMDMCEEYNTTIHTTIRSTVKPSKEEKTMGTIVVPASKLVPVPPDFQLNFSRLPALGAISKANIITKAKTPSINLKVTIGTSILTQTVNTSTVNIAVTQTTDSNVMSTVNSDISKVWDINIVPQEIFSTNEETTPNDKGHDDDESGKSGDGNDENGDEEEREMEIDEDCNMAVVPVASDSRDPFSNIKTEDEQLSEYTEYITITEGTGDADGNYVFGKFKVYENGDDDEQHTIVVEGDDASVLEMMSGQKVIYEKGGLSLLMAEDGASHEAPDDDDDGQDSNEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSTGDSSSFDVESLVSKQGDQFRCNLCLQREEETLLEAAPMMQHLKSVHDAKMYLCQFCGRGMRKRSEYNTHLAEHSSKASPASSKPGSQKRLHECSLCSKCYTSRTLLHEHMNTHTGTRPYRCDHCRKAFASKYTLNAHLKTHQVRPRPYKCEQCDKSFLSVQNLRQHVKTHSGVKDFICKFCNKAFGTQHNLEIHGVVHTGARPYRCHYCDKAFARRAELVDHRRTHTGERPFECEVCGARFAQRSNLHSHRRDTHLHEKRYQCADCPKRFKRRRLLEYHIKASHTGERPLKCDVCAATFVYPEHYKKHVKIHSGVRPFVCEICGKSFNTRDNRNTHRFTHSEKKPYECLTCGHSYMRKRLLIAHMNSSCLTCGHSYMRKRLLIAHMNSSVSTSILYSILYVSTGLLYSIQHECLTCGHSYMRKRLLIAHMNSSGHLAESIVVNQPRVTRVHKTEAGITTLVEVDDPPEMLDADEKIEAIFRTSGKLESLDKSAIITKIMEHGGDEKLFVECDNLETENEDGAILEPVNGATTEGQTTHYGTDENGAVLRLIQVKLPDGNDGWVAFND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-