Lhir022726.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:1632529-1635298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 1.7 9.9 1.9 1 23 67 89 67 89 0.99 2 20 0.086 6.9 8.0 0.2 2 23 117 139 116 139 0.96 3 20 2.6e-05 0.0021 19.1 2.2 3 23 164 184 163 184 0.98 4 20 0.007 0.56 11.4 0.5 2 23 188 209 187 209 0.96 5 20 0.41 33 5.8 8.3 1 23 214 236 214 237 0.92 6 20 0.056 4.5 8.6 3.4 2 23 249 271 248 271 0.96 7 20 0.00056 0.045 14.9 0.4 1 23 277 300 277 300 0.98 8 20 1.1e-07 8.6e-06 26.6 0.4 2 23 305 326 304 326 0.96 9 20 0.00019 0.015 16.4 1.8 1 23 332 354 332 354 0.98 10 20 0.025 2 9.7 0.4 2 23 359 381 358 381 0.95 11 20 0.018 1.5 10.1 2.2 1 23 440 462 440 462 0.98 12 20 0.033 2.7 9.3 0.1 2 23 489 511 488 511 0.96 13 20 8.2e-05 0.0066 17.5 0.7 3 23 536 556 535 556 0.97 14 20 0.064 5.2 8.4 0.3 2 23 560 581 559 581 0.95 15 20 0.00042 0.033 15.3 1.0 1 23 586 609 586 609 0.96 16 20 2.5 2e+02 3.4 3.7 2 23 621 643 620 643 0.91 17 20 0.00029 0.023 15.8 1.1 1 23 649 672 649 672 0.98 18 20 6.7e-06 0.00054 20.9 0.7 2 23 677 698 676 698 0.96 19 20 0.00018 0.015 16.4 2.8 1 23 704 726 704 726 0.97 20 20 0.061 4.9 8.4 0.4 2 23 731 753 730 753 0.94
Sequence Information
- Coding Sequence
- ATGAATACCGTAATATTTATTAGCTTAGTCATAAATTTGCGGAAATGCATAGGAAGTCCGGCATTGGCGCAAGAGCCCGCGCCTTCAGACGATGGACCGAGAACTAGTGCGTGGATAATCACAGCACCAGAACGAGAGAACGCGGCTACGTTCCTACAGTTCACAACTGTTATCCCATTCACGGCGCTACAAGGCAGCTACAAATGCTTCTACTGCGAAGAAATATTCACAGAACTACATGCGGCTTTACAGCACACAAAGACTCACGCTATTCCCACTCGGTCTTCTCTGTTGGATACGTATATCAAAAACGGCAAGAGAGTCATCAAAGTTGATGCTTCTGGACTGAAATGTAGGATCTGTGAGCTGAAATACACGGAGCTGGAGGATATTAAGACGCATTTGATCACAGCCCATAAGAAGGCTTTCAGTAAAGCTGGGAATGGTCTGATGCCTTACAATCTCAGCACGCCAAGTGGCAACGTCGCATGCCACAAATGCGGGTTGGAATTTACTACATTCTTCTCTTTGAACCGTCACATGAATGTACACGACAATCTGGTCTGCGAAACTTGCGGTTTAGGATTCGTATCTCACCAGAGGCTCAGAAGCCACAGGATCGTGCATCAAAATGGAAATCATAAATGTGAGCAATGTCAACGAGTGTTCTCCACGAAGATGAAACTCCGTTGTCATGCTACCAGGCACCACGAACAAACAAACGTGAAAAGGTTAAAGCCAAACAAATGTCCGCACTGCTTGGAAAGATTCTCAGAGCATTATCAAAAGATGCTTCATATGAGAGAAGTTCACGGAATCACTTTCAAGTTCGAATGTCAAACTTGCAAGGCGGAGTTTCCGAATAAAATGGCCTTGACGGAACATACCAGAAAAGTCCACATACAGAACATTGTGTGCAAAATCTGTGGAAAGTGCTTCGGTACTCCGGGTGCATTGAGGAGACATATGAGAGGGCATACTGGCGAAAGAAATTTCATTTGCGCCGTCTGTCAGAAAGCATATATGCATGAGAAGCAGCTCCGTATGCATATGAAGACTCATGGCTATAAAGTCACTTGTCTTAAATGTGGGAACGGCTTTTTGGATAAGGCTGATTTGACGAAACATAAAAGGCAGTGGCACACCGACCAGACGCGAATTAAAGCCTCCAGAGCCCCGGCCTCGCCGTCAACCATTACTCAAACAGACTACGGCCCAAGAGCTGATATTTGGCATATGACGAAACCGGTGCGCGAGAACGCCGCCACTTTCCTCGAGTTCACTACCCTCATACCTTTCACATGGCTCCAGGGCAGCTTCAAATGTTTCTATTGCGATGAAATATTCACGGAACTGCACCCAGTTCTACAGCACACGAAAACACACGGGGTTCCCAGCCGATCTGTCCTACAGGATACACTCATAAAGGGCAAACGGGTAATTAAAGTCGATACATCCGAGTTGAAATGCAGAATTTGTGAGCTAAAGTATTCAGAGCTAGACGATGTTAGAAATCATTTGATGGTCGCTCATAAAAAAGCGTTCAATAAAGCCGGAGACGGTCTGATGCCCTACAACCTCAGCCCGGCGAGCGGTAACGTCGCGTGCTATAAATGCGGTTTGGAATTCACTTCCTTCTTCTCTTTAAATCGTCACATGAACGTTCACGACAACTTGGTCTGCGAGACTTGCGGCTTAGGGTTCATGACCCACCTCAGGTTGAGGAATCACGTTATCGTCCACCAAAATGGAAACTACGAATGCGAGCAATGCCAAAAAGTATTCCCTACAAAATTGAAATTGCGATACCATGCCCTCAAGCAACACGAGGAGACGAACGTAAAGAAGCTTAAACCTCTAAAATGTCCTCACTGCTTGGAAAGATTCTCTGAACACTTCAGGAAGTTGCGACATTTGAAAGAAGCTCACGGTATCACATTCAAGTTCGAGTGTCAGACTTGCAAGGCTGTTTACTCGACACGTAGAGCCTTGAGGGAACACACAAGAAAGCTCCACTTACAAAATATTGTATGTAAGATCTGCGGGAAGTGTTTCGGAACGCCGGATTCTTTAAAAATGCATTCTAGAGGACATGTAGGCGAAAGGAACTTCTTTTGCGCCGTCTGCCAAAAGGCATACATGCACGAAAGGGATCTACGGAAGCATATGAAGACTCATGGTTATAAAGTCACTTGCCTTGAATGCGGAAACGGATTTTTAGATAAAACTGAGTTGAACAAGCATAAAAAGCAGTGGCATTCAGAACAATCTAAGCCTAAAGAATCTCTGCCGGGAAAGGCTTCCGTATAG
- Protein Sequence
- MNTVIFISLVINLRKCIGSPALAQEPAPSDDGPRTSAWIITAPERENAATFLQFTTVIPFTALQGSYKCFYCEEIFTELHAALQHTKTHAIPTRSSLLDTYIKNGKRVIKVDASGLKCRICELKYTELEDIKTHLITAHKKAFSKAGNGLMPYNLSTPSGNVACHKCGLEFTTFFSLNRHMNVHDNLVCETCGLGFVSHQRLRSHRIVHQNGNHKCEQCQRVFSTKMKLRCHATRHHEQTNVKRLKPNKCPHCLERFSEHYQKMLHMREVHGITFKFECQTCKAEFPNKMALTEHTRKVHIQNIVCKICGKCFGTPGALRRHMRGHTGERNFICAVCQKAYMHEKQLRMHMKTHGYKVTCLKCGNGFLDKADLTKHKRQWHTDQTRIKASRAPASPSTITQTDYGPRADIWHMTKPVRENAATFLEFTTLIPFTWLQGSFKCFYCDEIFTELHPVLQHTKTHGVPSRSVLQDTLIKGKRVIKVDTSELKCRICELKYSELDDVRNHLMVAHKKAFNKAGDGLMPYNLSPASGNVACYKCGLEFTSFFSLNRHMNVHDNLVCETCGLGFMTHLRLRNHVIVHQNGNYECEQCQKVFPTKLKLRYHALKQHEETNVKKLKPLKCPHCLERFSEHFRKLRHLKEAHGITFKFECQTCKAVYSTRRALREHTRKLHLQNIVCKICGKCFGTPDSLKMHSRGHVGERNFFCAVCQKAYMHERDLRKHMKTHGYKVTCLECGNGFLDKTELNKHKKQWHSEQSKPKESLPGKASV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -