Lhir018420.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycia hirtaria
Gene Symbol
-
Assembly
GCA_947563715.1
Location
OX387378.1:12627239-12644340[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2.1e-05 0.0017 19.4 4.8 1 23 199 221 199 221 0.97
2 13 3.3e-06 0.00027 21.9 0.1 3 23 235 255 234 255 0.98
3 13 0.00014 0.011 16.7 2.4 2 23 264 285 264 285 0.98
4 13 0.0014 0.12 13.6 3.2 1 23 291 313 291 313 0.98
5 13 1e-05 0.00082 20.3 3.0 1 23 319 341 319 341 0.97
6 13 1.3e-05 0.001 20.0 8.5 2 23 348 369 347 369 0.97
7 13 4.5e-05 0.0036 18.3 0.8 1 23 375 397 375 397 0.97
8 13 1.7e-05 0.0013 19.7 1.7 1 23 403 425 403 425 0.98
9 13 0.0014 0.11 13.6 1.6 1 23 431 453 431 453 0.98
10 13 0.00019 0.016 16.3 0.8 1 23 459 481 459 481 0.97
11 13 2.3e-05 0.0018 19.2 0.5 1 23 487 509 487 509 0.98
12 13 9e-07 7.2e-05 23.7 1.1 1 23 515 537 515 537 0.99
13 13 0.00023 0.018 16.1 2.4 1 23 631 653 631 653 0.99

Sequence Information

Coding Sequence
ATGGCTGGAACAGCGCGTCAAAAATTGAAGAATTTGAGCTTCGAGAAAATATGTCGAGCATGCTTGGAGGTAAAGAGAGATATGAGACCCTTGTTCGAGCAGCTCACAGCTACGATGTTGATGGACATTTCGAAAGTGCAGGTGGCGGTAGGCGACGGTTTGCCTCCACAGCTGTGCATGCAATGCGTGCATCAGATATCGCGCTGTCACGCGTTCAAAGACCTCGTGGAACGTAACGATGCGGCGCTGCGGGAACATGCCAAGTACCTCGCAGATGAGGCGCTCAAGAAGGAACAAGAGACGAAAGAGACGTTGATGCAGCTGAACTGTCCAGACCCCTATATGCAGTACATGGACGTGCCGTTGGCGACTCCTGCGCAGATCCTCGACGGTTTCTTTGCGCCGGCGGCTCCTGACCTCGACGCGCCCAAGGATGACCTCAAGGACGCTTTAGAAAACAAGAAAATACACCAATTGCAGGCTGCAGTAGTGGCGCCGTCTACATCCACGAAAGAAGACGGCTTGAACTCGGATGAGGAGAACTACCTCGAACTGGTGGTCTTCCAAGCCATGTCGACGGTATGCCCCGGCAGGCACGTGTGCAACCTCTGCCATAAGGAGTTCAAGAACGCTCGCTGGCTCAAGCAGCACATGAAGTCGCATACGAACTGGATCAAGGCGAATTGTAAGAAACCGCCCATGTGCCCCATTTGTGAGAGAGTTTTTAAGGGTCCAGGGATGCTCAAAATGCACATGCGCACCCATGAGCAACGTCCACCGAAGCAGCCGACGTGTTCCGTCTGCCAGCGCAAGTTCCCGACAAAGACTCTGCTTTACCGACATCGGCAGACTCACTTCGAACAGAAGACGCACCAGTGCACCTTCTGTGAGAAGCGATTCTTCAGCGGGTACGCACTGCGCTCGCACATGGCGCGGCATCGAGGCGAGAGGCCTTATATCTGCTCCCATTGTAATAAGAGCTTCTACAACCCTACGGATTTGAAGGTCCATTTCCGCCTGCACACCGGTGAGAAGCCCCTGAAATGCAACGAGTGCAATAAGACCTTCCGTCGACACTCCACGCTCTGTCAACACATGAAGAAACACAAAGGGATCAGGAACCACATCTGCACTGTATGCAACAAGGGATTCTACGAAATCTCCAAGTTGAATGCGCATATGAGGGTTCACACAGGTGAGCGTCCATTTGAATGTCAGTTCTGCTCGCGTCGGTTCGCGCAGCAGTCTGCGTTGATCTACCACCGGCGCACGCACACAGGCGAGAAGCCTTTCTCCTGCAAGCTGTGCTTCGCCAGGTTCACCACCTCGTCGGCGAGGAACAACCACATGGTCACACATACTGGGAACAAGAGGTTCGTGTGTCAGATCTGCCTGAAGGCGTGCACGTCGCGGTCAGAGCTCCGCGTGCACGTCGCGCGACACTCGGGCGAGAAGCTGTTCGAATGTGGCGTGTGCTCTCAGCGGTTCAGCACCGCGTCCTACCTGGCCGTACACCGGCGGTACCACACCGGGGAGCGCAAGTACCAGTGCAGCGTCTGCGGGAAGGGATACGTGGAATCCAGTTCATACAAGAAACACATGAAAACCCATGAGCAGAAGGACACGGATGATAGCTCAGAGAACAGAGAAGAACAAGACGCCGTTAAAGGCGAGGAACAAATCGCCTCCCCAGCACCTGGTGGGGAGGAGCCGATTGAGATACCGAGCCAGGGTCAACAAAATCAAGTCCAAGCGCAAGTCCAAATGCAAGCTCAAGTCCCAGCTCCAAATCAGATTCAAGTCCCGGAGCTACAAGATCCGTTGCATGAAGGGGTGCAGTCGCCCGCAGCGGAGTCCCGGCCACAGACGCAGGCGCCACAGCAACGTCGCTACAAGTGCGGCGTCTGCGTCAAGACTTACATGTACCTGCACAGCTTGAGGAAACACATGGCTACTCATAACGTACAGGTCATACAGCCACAGCAACAGCAACAACAACAACAACAGCAACAGCAGCAACAACAGCAACAACAACAGCAACAACAACACCAGCAACAAGTGCAACAAGTCGTTCAACAACATCAACAGATATCGCAACAGCAACAAACACACCACATCCAGACACAGCACCACCATCAGCTGCAGCAACAGCAGCAACAGTTGCAGCAACAGCAGTTGCAGCAACAGGTGTTGCAGGTGAGCGGCGTGCAGCAACTCGCGATGCCGATACACACCCAACACGTGCCGCAGAGCATCACCGTCTCCGGCGTGCAGCAAGCGGCGCAGCACGCGTACCCGGTGATATCTTCAGTACAGTCCCTGCAGTTGCAACAAACTCAACAGGTTAACACGCAACCGCAACAGCTGCACGTCCAGACGATTCAGATCCACCCCCAGCAACAACACCAACCGATTCAAATACATGCGGTGGGAATGCAGCAAGTCCAACAGCAGCAGCTGCACGTCGCCACGTCCACCTGTCAGACTATGCTGCCTAATATTCTGCAGCTGCAGCCGGCGACGGTGGTGTCCGGGTTGGGTCAGCAGGAGCTGGGCGGCGTGGCGCACCGCATCATCCTGCAGCCGCAGCATCAGGCGCCGCATCAGGCCGTCTACACCATACACCACTGA
Protein Sequence
MAGTARQKLKNLSFEKICRACLEVKRDMRPLFEQLTATMLMDISKVQVAVGDGLPPQLCMQCVHQISRCHAFKDLVERNDAALREHAKYLADEALKKEQETKETLMQLNCPDPYMQYMDVPLATPAQILDGFFAPAAPDLDAPKDDLKDALENKKIHQLQAAVVAPSTSTKEDGLNSDEENYLELVVFQAMSTVCPGRHVCNLCHKEFKNARWLKQHMKSHTNWIKANCKKPPMCPICERVFKGPGMLKMHMRTHEQRPPKQPTCSVCQRKFPTKTLLYRHRQTHFEQKTHQCTFCEKRFFSGYALRSHMARHRGERPYICSHCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHKGIRNHICTVCNKGFYEISKLNAHMRVHTGERPFECQFCSRRFAQQSALIYHRRTHTGEKPFSCKLCFARFTTSSARNNHMVTHTGNKRFVCQICLKACTSRSELRVHVARHSGEKLFECGVCSQRFSTASYLAVHRRYHTGERKYQCSVCGKGYVESSSYKKHMKTHEQKDTDDSSENREEQDAVKGEEQIASPAPGGEEPIEIPSQGQQNQVQAQVQMQAQVPAPNQIQVPELQDPLHEGVQSPAAESRPQTQAPQQRRYKCGVCVKTYMYLHSLRKHMATHNVQVIQPQQQQQQQQQQQQQQQQQQQQQQHQQQVQQVVQQHQQISQQQQTHHIQTQHHHQLQQQQQQLQQQQLQQQVLQVSGVQQLAMPIHTQHVPQSITVSGVQQAAQHAYPVISSVQSLQLQQTQQVNTQPQQLHVQTIQIHPQQQHQPIQIHAVGMQQVQQQQLHVATSTCQTMLPNILQLQPATVVSGLGQQELGGVAHRIILQPQHQAPHQAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00143240;
90% Identity
-
80% Identity
-