Lhir011095.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387376.1:16431566-16442293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.012 0.92 10.7 0.9 3 23 209 230 208 230 0.90 2 24 1.5 1.2e+02 4.0 0.1 6 23 589 608 589 608 0.90 3 24 0.03 2.4 9.4 0.3 1 21 613 633 613 634 0.96 4 24 5.1 4.1e+02 2.4 0.2 1 23 675 698 675 698 0.89 5 24 0.00069 0.056 14.6 1.8 3 22 709 728 709 728 0.96 6 24 0.21 17 6.8 0.2 3 23 737 758 735 758 0.95 7 24 0.16 13 7.1 0.6 3 23 779 800 777 800 0.95 8 24 0.021 1.7 9.9 0.9 1 23 806 829 806 829 0.92 9 24 0.1 8.3 7.7 0.0 1 23 855 878 855 878 0.90 10 24 0.0045 0.36 12.0 3.5 1 23 883 905 883 905 0.97 11 24 0.0062 0.5 11.6 0.2 1 23 911 934 911 934 0.95 12 24 0.0025 0.2 12.8 1.5 1 23 941 963 941 963 0.97 13 24 0.00015 0.012 16.7 1.8 1 23 1013 1036 1013 1036 0.97 14 24 0.0059 0.47 11.6 1.4 1 23 1097 1120 1097 1120 0.96 15 24 0.0017 0.13 13.4 1.5 2 23 1146 1168 1145 1168 0.95 16 24 0.24 19 6.6 0.1 3 23 1175 1196 1174 1196 0.94 17 24 0.0082 0.66 11.2 0.2 1 21 1240 1260 1240 1261 0.95 18 24 0.001 0.082 14.0 0.6 1 23 1271 1293 1271 1293 0.93 19 24 9.2e-05 0.0074 17.3 0.3 2 23 1389 1411 1389 1411 0.93 20 24 6.3e-07 5.1e-05 24.1 1.3 3 23 1418 1438 1417 1438 0.98 21 24 0.013 1.1 10.5 0.6 1 23 1456 1478 1456 1479 0.94 22 24 0.17 14 7.0 0.0 1 23 1500 1522 1500 1522 0.98 23 24 0.023 1.8 9.8 0.6 1 23 1528 1551 1528 1551 0.95 24 24 0.00021 0.017 16.2 0.4 1 23 1559 1582 1559 1582 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTGTGATCGTGTTTGTAGACTGTGCTTGTCATCCCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGATCCTCCCATCCTCGTCACAAAAATCAAGGATTGCGTGTCTGTCCAGATAAACCACAATGACGAACTGCCGACAAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATATATTCAAGACTGTTTGTGAAAAGACACAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAATAAAGAGTGAGCCATTTTATGATGAGGGTTATGATGATGGAGTGGTTATAGATGGTTCCTATCCGGTCATTGAGAATGTGGCTTCAACCAGCAAATTACAGCCTGAAGGGCCCCCGATCCTGGCGTCTCTGGGCCTCACCCCAAGGAGCGATAAGGGCGTGGAAAGCGAGAACAACGAAGAGGATGATTACGAGGAAGATGTGAACGAGCCGGAGCCACCTCAACCTGTGAAAGTGCCGAACATGCCTGAAGTGTCCATCACAGTGATGCGTAACACCGGAGAAACACTCCACGCGCGGCAAGGCATACAACAACTCGCCTCGAAGGATTGCCTCATTTGCGGACGCACCTACAGGTACTCACATAACGCCCGCAGGCACGAGCTAGCGTCACACAGCTTCGATCGCTATACCAATAAAGTAACAAACAAAAAGTCACACTCGCACCTCATGCCCAAACTCAGACCGAACCCCTTCAACCCTAAAGCTCGCCTAATGCCTAATCCCATCAGCCACAAACTACAGTTCATGCCCAAAAATATTCCCACCAAAATTATTCCTCACAAAGTCATCGCCCCACCGAAACCTATACCCATAAAAACTTCTAAAGTTACGCATAATAATCTACCGTATCCTCTACGCATAAAAGCTCTCAAAGACTTACAGATAAAGAAAAAAGAACCGCAAATTTTGAAGACTTTGCTTACCGCGAAACCTGAAGTATTAGTTTCGGAGCCGGAAATAATGAATTCTGGTCCGGAAAGTCCAGAAACTTTGATATCCGAGCCAGAAATAGCGTCTTTCCAGGTGGAGGCTATTCTATCAGAGCCCAATGAATACGAACAAAATCACGAGGAGGAAGGGGAGATAGAACAAGAGAATCAAACGCAAAATTATGATACTGTCGATATGCAGTCTGATCACGAAATCGAGATCTCTCATCAGCAAGAAAATGAAGGCGAAGACGTTGAAAAGAATGAATTCGTAGACAATAATGATGAGAATGTACATCAAGAGCAAGATCAAGATCATCAAGTCGATGACGATGAGAAGCAGGGCGAGAGTGAGAATGAAGGAGAGCATGATACCGGTGACAGCCAGGGAAATATGGAGATAGACGAGAGTTGCACTCATGCAAGCATTGAAGATATGAGCAAAATGGATAAAGATGAAAATGACGGCGATGAGAACGATGACCAAGACGCAAATCCCGAGGCGGATGAAAATGAAGAAGAGGAAGATATGCCACCACCTCCAGTCGTAGAACTCAACGAAGAAATTCAGCATTCCTCGAGTGAAATGAACGAGGAAGACGAGGAACTAGATGAAACGGGTGCCCTCAATGAAACAGGCGACCAAAAAGCGACAGAACTCGATCCAGACAAGACGTACGTCACCAAGGCACAAAAGGATTTCATAGAAAAATATCGCGACGTCATTCAACAGATTAATACTAAAAAATGCATCTGCTGTGATAAAACTTACCCACGAAGAAAGGCAGTTGTTCAGCATTTACAGAAAAATGGACACAAAGTTCCTAAACATACGTGCTACAACTGCGTAATTACGTTCACTCATATCGGCGCGCTGCTCAGTCACATGCGAGCGAACGCCTGTACCGATCTTTGGAAAATCATATTCGATGAGAAGGGGATTCCCGATGATATGGTTATTAAATATGAGCCTCAGGTTAGGATTCAACCTAAAGACATTTTTAACGCCCGTTCATACGCTTGTAGGCTTTGTCCGGCCAAGTTCCAACTGAAGCAATCCATAATGAAGCATGTGTTGGATGTGCATGAAGATGGGCAGTCTATTGTCCCGCTCGGGTGCGTTCACTGCCGAACAAGCTTCAAAGATAGAACTCAGCTTAAAAAACATATCCGTGTCGGCGAATGTACTGTTTACATTAATTGTGACTTGTGCTCGGAACAATTTTCTAACATGCAAGACTTCAGCGATCACGCTTTGACGGTCCACGCCGATCACTTCGAGAAGTCCGACAACCAAAACAAATGTATCGATGGACGGGCCACGGACTGCTCCCTCTGCGGGAAGAAAAATAGCAACTACTTGAATCTTGTGAAACATTTGAAGTTGGTTCACAATGAAGACAGGCCGCATTACTGTCAGAATTGCGATTCTAAATTCGAATTTGCCGCCGACTTGAATAAACACATTTATGCCGAACATTCAGACCAAGCATTGGGGTTGACGCCTCAAGAGCCGGACATATCTCTCGTGAAAGAGGAAACCGAAGAGTACCATTACTCGTGCACGGAATGTAATGCGATCTTCGAAACTGTCGACGCCTGGACGGACCATCAAGTCGCGGAGCACAACCAAGTCGCCCATCACTGCGACCAGTGCGACAAGAAGTTCTTGAGGCCGTCCGAACTAGCAGAACACAAAAATACCCACCTGAGAGTCAAGTTTTACTCTTGCAGTGTCTGTCCCAATTCATACAGCACACCTCAAAAATTATCAGACCATGTTCAACAGGCACACCCTGTCGGCGATACTGAATTCTTCTGCGACGTATGCATTCGTTCGTTCAAGAGTCGTCAGGCTTTCTCCAATCACATGCGTATCCATGCTAAGGTGCCTACCACTAACAGAAAACCAGGTGAAGCGAAGGGTTTCGATCCGCGCATTATAGGAAAACCAGTCAAACAATTCACCATGGTCCAACCAGGTTTTGTGAACTTCAAGCCTAATAACGCAAACGTTCCTAACGCACCTTATTCGTGCGACATATGCGGTAAAGGTTTCATGCATAAGAAGAACATATGGAAACATAAGAAAGTCTTACACGCGGATATTATTAACGACAGAAATGATAGCGAGGAAAACACGATGCACGCATCTACAGAAGATGACGATTACAACCCAGATGAGAATGGAGCTCTCTCCACGCCTCAATTTAACAGCTTTAACTTCTCAAACTTTACTAACAGCACACCTCAACAACAACAGCAGCAGGACCCCTTGCCCTACTCGTGTGAACTGTGCTTTAAACGATTCCCGATCAGGACCAGCCTGTGGAAGCACAAGCGGGCTAAACATGGAATAGTAAACCCCGGTGCTAACGCCGGCATGGACATGATGGCTCAACCAAAAGCCGGCGATTCCAGCCGTTCTAGCTGCACCATTTGTAAAATAACGTTCGCAGACAAGAAGTCCTACTACCGTCACAGAAAGAACGTTCACAAAACGGCCACTGAGATGTGTAAACTTTGCGGCAAGCCGCTCAATTCTACCTTGGAACTGTATGAACATCTGAAAGCGGCACACGCCCGGGAGTTGCTCGGCTACAATGCCAATCAAGGCTCGAGTAAAACGCAAGAGGTGGCCCAGGAACAAGATCCCGAGTACGACAATGAACAGGAATCTGCGGACCCCAGCATGGATTACCAAGCTCGGTATCCGTGCGACACGTGCGGGAAACAATTCGTCGGTCTCCTCGCGTTACAGAACCACCAGTGTATAAACCAGCTCCCGCCGCAACCTCAGACTTTCGACTGTGAAATCTGCCACAAGAGCTATACGTCTATAGCCGCATTGAAGAGTCACCGCGGTTGGCACTTGCGATCGCCAGACGGTAAAGCGGCTGCCAACAACAGCGGGCTTTGGATGCCGCAACATAAAGTGACGAGTAAGGTCAGCAAACACGAGGTCGTCGATGCGGTGCAGTTGGCTCGCGTCTCACATTCGACCTCCGGCTCGCATTCAGCGCCCGCCGCCGCCGTCACGGCTAAAAGGAGACTACCGCCCGAAGTCGAAGTCACCGTCGTTAATCCTAACAAAAAGTTACGCTCCGACGACTCGGTCGAAATGGACCAACAGAACAACGAAAGTTCAGACGGGCGATACTGCACCATTTGCGATAAGGAATTCACGAAACGCGCCGCGTACCAGCGTCATATGGACGAGGTGCATCAACCGAATTCTGTGTTCTGTCCGGTTTGTGACAGGAGCTTCACGAGAAAGTCGACGCTTCTGGTTCATATGAAGAAGCATTATGAAAGTGGGGAAGCGGGCACGTCTTCCGTGCAGACTGAGGAGGAGGGTCACACTTGTGACGTTTGCGGTGCTGTCTTTGAGAGCGAGAAGGGTGTGAATGCGCATAAGGCGAGGCATCACGCGGAGGACTCCGGGGAGTCCGAAGACGAGGGACTCGCCCCCGTGGCACAACCGGGGGAATTCACCTGCGGTCAGTGCGGTGACGGTGTTGCCAGCCCGCGCGATCTGTTAGCCCATCGTTCGATGCACGCCACACCCACCAAATTCTTCTGCAACATCTGCAAAGTTTACTTCGCGCGGGCTCTCGATCTCTCCTCGCACACACGTGCGAGACATGCGGACAATGAGAAAGTATTTTTCCCTTGTGCCATGTGTGACCGTTTCTATATGAATAAGAAGAGTTTGCAACGGCACATCGAAATGGCACATTGA
- Protein Sequence
- MNVNCDRVCRLCLSSRGELLPIFPTTSSDDTDPPILVTKIKDCVSVQINHNDELPTNVCRKCMDNVNNWHIFKTVCEKTQNKLQSLIKKDGSLLEEVKIKSEPFYDEGYDDGVVIDGSYPVIENVASTSKLQPEGPPILASLGLTPRSDKGVESENNEEDDYEEDVNEPEPPQPVKVPNMPEVSITVMRNTGETLHARQGIQQLASKDCLICGRTYRYSHNARRHELASHSFDRYTNKVTNKKSHSHLMPKLRPNPFNPKARLMPNPISHKLQFMPKNIPTKIIPHKVIAPPKPIPIKTSKVTHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNEYEQNHEEEGEIEQENQTQNYDTVDMQSDHEIEISHQQENEGEDVEKNEFVDNNDENVHQEQDQDHQVDDDEKQGESENEGEHDTGDSQGNMEIDESCTHASIEDMSKMDKDENDGDENDDQDANPEADENEEEEDMPPPPVVELNEEIQHSSSEMNEEDEELDETGALNETGDQKATELDPDKTYVTKAQKDFIEKYRDVIQQINTKKCICCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRANACTDLWKIIFDEKGIPDDMVIKYEPQVRIQPKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSIVPLGCVHCRTSFKDRTQLKKHIRVGECTVYINCDLCSEQFSNMQDFSDHALTVHADHFEKSDNQNKCIDGRATDCSLCGKKNSNYLNLVKHLKLVHNEDRPHYCQNCDSKFEFAADLNKHIYAEHSDQALGLTPQEPDISLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYSCSVCPNSYSTPQKLSDHVQQAHPVGDTEFFCDVCIRSFKSRQAFSNHMRIHAKVPTTNRKPGEAKGFDPRIIGKPVKQFTMVQPGFVNFKPNNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEDDDYNPDENGALSTPQFNSFNFSNFTNSTPQQQQQQDPLPYSCELCFKRFPIRTSLWKHKRAKHGIVNPGANAGMDMMAQPKAGDSSRSSCTICKITFADKKSYYRHRKNVHKTATEMCKLCGKPLNSTLELYEHLKAAHARELLGYNANQGSSKTQEVAQEQDPEYDNEQESADPSMDYQARYPCDTCGKQFVGLLALQNHQCINQLPPQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVSHSTSGSHSAPAAAVTAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNNESSDGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYESGEAGTSSVQTEEEGHTCDVCGAVFESEKGVNAHKARHHAEDSGESEDEGLAPVAQPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -