Lhir014853.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387384.1:35238010-35245477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00038 0.031 15.4 0.7 3 23 67 87 65 87 0.95 2 24 0.026 2.1 9.6 3.9 1 20 107 126 107 128 0.94 3 24 0.05 4 8.7 2.3 1 20 182 201 182 203 0.95 4 24 0.22 18 6.7 2.0 2 22 703 723 702 723 0.94 5 24 0.00066 0.053 14.6 0.3 1 23 742 764 742 764 0.91 6 24 6.7 5.4e+02 2.0 0.4 5 23 772 791 770 791 0.94 7 24 0.0079 0.63 11.2 0.0 1 23 879 902 879 902 0.96 8 24 0.00013 0.01 16.9 1.0 2 23 911 932 910 932 0.95 9 24 0.0014 0.11 13.6 0.4 1 23 938 960 938 960 0.96 10 24 3.7e-05 0.003 18.6 1.3 1 23 966 988 966 988 0.98 11 24 3e-05 0.0024 18.9 1.3 1 21 994 1014 994 1016 0.91 12 24 3.6e-06 0.00029 21.7 1.7 1 23 1022 1044 1022 1044 0.98 13 24 0.025 2 9.7 1.8 6 23 1054 1072 1050 1072 0.94 14 24 0.0021 0.17 13.1 1.8 2 23 1082 1104 1081 1104 0.94 15 24 0.044 3.6 8.9 1.1 2 23 1112 1134 1111 1134 0.96 16 24 0.0028 0.23 12.6 2.5 1 23 1140 1163 1140 1163 0.95 17 24 5e-05 0.004 18.2 5.9 1 23 1172 1195 1172 1195 0.97 18 24 0.00026 0.021 15.9 0.1 1 21 1198 1218 1198 1219 0.95 19 24 0.0053 0.42 11.8 1.9 2 22 1223 1243 1222 1245 0.88 20 24 1.7e-05 0.0014 19.6 0.6 1 23 1254 1276 1254 1276 0.98 21 24 0.00056 0.045 14.9 0.8 1 20 1283 1302 1283 1302 0.97 22 24 0.016 1.3 10.3 2.3 2 21 1311 1330 1310 1331 0.94 23 24 0.00027 0.022 15.9 0.7 3 23 1341 1361 1340 1361 0.97 24 24 0.0024 0.19 12.9 0.2 2 23 1367 1389 1366 1389 0.96
Sequence Information
- Coding Sequence
- ATGATTTTCAGATATGACGAGTGGGTCACCAAAAGTCGTATCTTCAAGTACAATGATATTAATATACAAAAACAACGAGAGCTTTTTAGAGAATTTGATGAACAGCTGGTGCAGGCTAAAAGAAAAACAAATGAAACAGATGAGAATATAATAAAGAAAACAAAGTATGTTAATGACACCAATGATGACGATCTTGCATGCACTAAATGCAAAAAATCATTTTCTTCACAATCCGATATTGACAAACACTGGCAATGGCATATACTACAACTAGAACATATGCAAAGTTGCTGTGTACAACTAGATCAAGTTGAAATATTCAAATGTGATTTCTGCACAAGTTGTTTTTCTGATGCAACAAAGCTGAGAAGACATAAAGAGAAATGTTATAAGAACATAGAAAATTTAGATATTACAGAAAAAAAGCAAGAATACTCTTCATGCAACAAATCACCTTTACTATCAGAACATGATGGATATATGCATAAGCTGCTGTTAGATCATATGTTTAGTTGCTGTGTAAAATTAGATCAAGTACAAATATTCAAATGTGATTTCTGCACAAGTTGTTTTTCTGATGTAGCAAAGCTGAGAAGACATAAAGAGGAATGTTTTAAGAATAAAAAAAGGTTAGATATTACTGAAACAAAGAAAAAATACATTTCATGCATTGAGATACGTTCTATGAAATTAGATCTGGACAAAGATTTGTATAGGAATACTCTGCAGTTAGAACATAAAACAGACATTACCTTGGATGAAATGGAAAAAGACGAAAATAGGAATAATGAAATCAATAAGAAAGATGTAAGTAAAAATAATAATATGGTTGAAAATGTATGTGACGATATCGCTGAAAAGGAAGTTAACAATATGGATGAAAGTGAATTTATCACTATGAATGACATTAAAGCTATTGATACAGAACTAATAGAAATAAACAAGTTAAAAGAAAAGTTAAATTACATGATAGATGAAAATAAAATTAATGAGAAAGCTAGTAATAAAATTAGTAATATTGATAAAAAAGCGACACTTGTCGTGGGTGATAATAAAACTGATGAAAATGAAACAAGCAAAATTAATCCTAGTGAAAGTAAGATGGAATATAATCCAACTTGTAATGAAACTTGCCAAAAAGATAAAACTTACCAGATGAATATAGATGGTAAAAACAACATAATTGAAAATGGAATGACCAGTATAAATGACAACGTATTTGACAACATCTGCCATAGAGAGTTAGATAAAAATGAAACTACTAAAATTGATAAAAAAGAAAGTAAAAATATAAATGAAAGTGAAAATTGTAATATGGATGAAGATCAAAGTAGTAAGATTAACAGAAATTATATGCAAAAACAAGAAAATAACAATATGGATGAAGACGAAGCTAGTAAAATGTACCAAAATAATATAGATGAAAATCATACTAAAAAGATTGACCAAAACGATATGGAAGAAAAAGATACTACCAATATTGATGAAAACGAATATAACAAAATAGATAAAAATGAAACCACCAACGAGATAGACCAAAACGATATGGAAGAAAATGTAATTAACAATATGAATAAAAATAATACTAACAATACTTTGTTTGACCTAAATGATATGGAAGAAAAAGAAACTAGCATTATGGATGAAAATGAAACCATCAAAATAGACCAATACGATATGAAAGAAAAAGTAACTAACAATGTGGATAATAAAGATACTTATAAGATTGATCAAAACGACATAGAAAAAAAACAAACTGACAATAAGGATGAAAATGAAACTAACAAGATAGAACAAAATGATGTGGATGAAAAAGTAAAAGACAATATGGATGAAAACAGTATTAACGAGAGGGACGAAACAATTCTGAACCATATAAACCAAAATAAAACATACATGGTAGAGACGCAATTGAGACAAGACAATATCAAAACTAACATTGAAAATAAAACCAACAGGTCGTTTCAAAATAAGAAAAGAGAGCATTCATACGTTTCACGTGTTGAAAAAGTCAAGCCAGATACTAGTAAACATTCGAAAATGTACAAATTACTACTAGAACATATGCAAAGTTGCCGTGTTGAATTGATTCAAGTCAAAGTATTGAAATGTGAATTTTGCTCAAGTTGCTTTCCGGATGTAGAAAAACTGAGAACACATCAGAAAAAATATTTCCAGACTGGCGACTTAATAGCTCGGGACAAGTATGATATAGAAAAGCCCTTTGAATGCGACATATGCGGATGGAGGTTTATGAATCGAACTACCCTCAAAGATCATTCGGTACTTCACGAGCCGTTCCCTAATATGTGCGAGTGTGGTGTCGGATATTACAAGAAATGCGATCTAGACGCGCACAGAAAGCTCGTTCACCCAAACTACGAGCCACCAACACACAAACCTACACCCAAACCACCAGCGTTCAAAATCAAAAGAGAAATCAAACGAGAAACATCGCCTGATATACAATTGAAACCGCACAATAAACAGGGACCGAGACTAAAAGCGACCCTGAGGTTTAAACAACCTAAAACTAAAAAGAAGAACATAATCCGTATTAAAATACAAAAACCGAAACCAAAACGTTTGAAAAGCACGATCAAAATGGATCTAGAGACGGATGAAAACGGCAATTATGCATGTACGTTATGTGCAGAAACATTCATAACTATTGACGATTTGATGATACATTTGTACACGGGGCATGTTGAAAAGGCTGCCGGCGGTTGGAGTTGTAAAATTTGCGGCAAAACAAAATCACATGCCAGCAATCTGAGAAATCATATGATCGCGCACGCGGGTCTGAAACCCTATTTGTGTGTCATATGCGATAAAAGATTCACGCAGACGGGAGCGGTTCTTTTACATCAAAAGAGGCATCTTGGCGATAAACAATTCCCATGCGAAGTGTGCAATAAGAGCTTTTATAATCATGCGGACCTCAGGCTTCATTCGAGAGTCCACACCGGTGAAAAGCCTTACGAATGCAAACAGTGCGGAAAGGGTTTCAGTGACCCCTCGGCTTTTAATCGTCACTGTATTATACACACAGGTCTAAAGCCTCACAAATGTGACATCTGTCCCAAAGCATTTTGCGACCCGGCGGCGCTATTCCGACACAAACGGGTTCACGATGGCTACAACGTGCAATGTATCGCGTGCGACCGAACCTTTAGCTCTAAAGAGTCGATGCTCAAGCACCATCGATTAATACACACCAAATTGAAAGAAAATGACAAACTTATATGTGATCACTGCGGTTTCACATGTAATTTTAAAAGTTATCTAGCAATTCACATGATTAATGCACACTTACGTCCACCTACAGAGGTCGAATGTGAAATCTGTTGTAAAAAATATGCCTCTCTATGGAGTCTCAAGAGTCATCTGAAAAGAGTGCATCTTAATATTAAACGGCACGAATGTGACCTATGTGGGTGGCGTTTCTACCATAATAGTACTATGATAATTCATAAAAAACAAGTTCATAGATCCAAAAATATGGAAAAGGCCTACGAATGTGATCATTGCCATAAATCATTCTATAGAAAATACTATCTCTATAATCATATCCTAATTAATCATTTAGGATTTGTATGTCAAATTTGCAAGTTGGCTTTCTCTACCTCGTTGACTTTAAAAAAACATATGGCAGTCGGCTGTAAACGTTGTAGGGTATGCGACAAAGCTTTTCGACATCCTGCACATTTGGACGAACACTTCATCGCTAAACACTTACATACGAATAAACAGCAAAAGTATGAATGTGATTATTGTGCAAAACAATTTCCTGTTAAGAGTTATTTGAAGAACCACATCAAGATACACATGCGCACGAAAGATGCGTTTCGTTGCGATCACTGCGATAAAACATTCTCGGCAAGAGAGTCGATAACGAGACATATATGGGATACGCACATGGTCAGCCTATACTGCAACATTTGCTTGAAGAGATTCTCCAGGGAGTGCGACTTTATAAAACACAAGCGCGAGGCTAACTGTCGTCCGAAAAAAGTTGCGTGTGAAATATGCAACAAAACGTTTTCAAGAAGGTATGCTAAATTGCAGCATATGTTATTGCACGAGCCAAGAAAGATGGAATGTGATATGTGCGGCGATAGATTTACTTTAAAGGGCACATTACTTAGACATATACGACTGGTGCACGATCCTGATTCTCGGGCCGTAGCCCGGCGGGGCAGGCTCAATATTGAGCGTAAAAAACAAAAGAAGCTTCAAGAAGATAAGCTGGAACTCACTAGAGATCCACAATCGTTTCAGTTGGAAATGGACGTTCTCAACGATGAAGTGAATTTAATGATTGAATAG
- Protein Sequence
- MIFRYDEWVTKSRIFKYNDINIQKQRELFREFDEQLVQAKRKTNETDENIIKKTKYVNDTNDDDLACTKCKKSFSSQSDIDKHWQWHILQLEHMQSCCVQLDQVEIFKCDFCTSCFSDATKLRRHKEKCYKNIENLDITEKKQEYSSCNKSPLLSEHDGYMHKLLLDHMFSCCVKLDQVQIFKCDFCTSCFSDVAKLRRHKEECFKNKKRLDITETKKKYISCIEIRSMKLDLDKDLYRNTLQLEHKTDITLDEMEKDENRNNEINKKDVSKNNNMVENVCDDIAEKEVNNMDESEFITMNDIKAIDTELIEINKLKEKLNYMIDENKINEKASNKISNIDKKATLVVGDNKTDENETSKINPSESKMEYNPTCNETCQKDKTYQMNIDGKNNIIENGMTSINDNVFDNICHRELDKNETTKIDKKESKNINESENCNMDEDQSSKINRNYMQKQENNNMDEDEASKMYQNNIDENHTKKIDQNDMEEKDTTNIDENEYNKIDKNETTNEIDQNDMEENVINNMNKNNTNNTLFDLNDMEEKETSIMDENETIKIDQYDMKEKVTNNVDNKDTYKIDQNDIEKKQTDNKDENETNKIEQNDVDEKVKDNMDENSINERDETILNHINQNKTYMVETQLRQDNIKTNIENKTNRSFQNKKREHSYVSRVEKVKPDTSKHSKMYKLLLEHMQSCRVELIQVKVLKCEFCSSCFPDVEKLRTHQKKYFQTGDLIARDKYDIEKPFECDICGWRFMNRTTLKDHSVLHEPFPNMCECGVGYYKKCDLDAHRKLVHPNYEPPTHKPTPKPPAFKIKREIKRETSPDIQLKPHNKQGPRLKATLRFKQPKTKKKNIIRIKIQKPKPKRLKSTIKMDLETDENGNYACTLCAETFITIDDLMIHLYTGHVEKAAGGWSCKICGKTKSHASNLRNHMIAHAGLKPYLCVICDKRFTQTGAVLLHQKRHLGDKQFPCEVCNKSFYNHADLRLHSRVHTGEKPYECKQCGKGFSDPSAFNRHCIIHTGLKPHKCDICPKAFCDPAALFRHKRVHDGYNVQCIACDRTFSSKESMLKHHRLIHTKLKENDKLICDHCGFTCNFKSYLAIHMINAHLRPPTEVECEICCKKYASLWSLKSHLKRVHLNIKRHECDLCGWRFYHNSTMIIHKKQVHRSKNMEKAYECDHCHKSFYRKYYLYNHILINHLGFVCQICKLAFSTSLTLKKHMAVGCKRCRVCDKAFRHPAHLDEHFIAKHLHTNKQQKYECDYCAKQFPVKSYLKNHIKIHMRTKDAFRCDHCDKTFSARESITRHIWDTHMVSLYCNICLKRFSRECDFIKHKREANCRPKKVACEICNKTFSRRYAKLQHMLLHEPRKMECDMCGDRFTLKGTLLRHIRLVHDPDSRAVARRGRLNIERKKQKKLQEDKLELTRDPQSFQLEMDVLNDEVNLMIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -