Lhir008572.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387381.1:6433255-6434808[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-10 4.5e-07 30.1 0.0 3 37 17 51 15 57 0.94 2 2 3.8 2.6e+03 -1.2 0.0 17 29 140 149 132 151 0.63
Sequence Information
- Coding Sequence
- ATGTCTCGAAGATATGAACGAAAGACTCTCCGAGCTTCTTGGAGTGCAGAAGATCTGGAAAAAGCAATGCAATGTGTTCGCAGCAAAGAAATGGGAGTAAATGAGGCTTCAAGAAACTTCAACATTCCGTCTCGAACTCTAAGAAGGCACCTTATAACGGGTAGATCAAAAGTTCCTTTAGGGCGCAACCCAGTATTTTCTAACAAATGCGAGAAAAAGTTAGTTGCTCATATAAAAAAACTAGAAAGTGTCGGCTTTGCCCCAGAAAGAAAAGATGTCAAAGAAATGGCTTTTCAATTGGCTGAGAAACTAAATATAAAAAATCCATTTTCAAAAACGAATGAGGTTGCTGGCAATGTTTGGTTTACTGGGTTTATGGCTCGCAATCCAGAATTAAGTCAAAGAAAATCCGAAGGATTATCTCTTTCTAGGGCGTATGGCGTCAATCGAGAAGATGTCAAAGAGTTTTTTGATTTGTTAACCAAAATATATGAAGAACACGATTTTACAAACCACCCTGAAGATATTTTTAACATGGATGAGTCCGGAATTCAAATAAACAATAAACCTGGCAAAGTAATTGCGACAAAGGGAGCTCGTGATGTTTATACACTTACTAGCTGCGAAAAGCCAGGACCATCATCAGTGAAAGCGGTTATTATGTCTAAAACACCTCAGAAAGACAAATCGTCTGAAACTCAAGAAACACCTAACAAGCTTTTAAGTACGATCCATCCAGTTCCCGTAATACCAGTTATGTCATCAAAGAGAAAACAAAAAGCTGTTGTCCTTACGTCTACAGAAAATATTGAGAAAAGAAAAGCAATTATTAGAAAAAGAAAACCAAAAGTTCAACCTAAAGAAAAAGTCTTAACTAAAAAAGCAAAAGGAAAAAAGACTGGAGAGAAAAAAGCAACTAAGAATAAAGATCCCGATATGACGGATATTTCTGAAGACGAGAACACAGATCAAGCTAAAAATCTTAAACAAACCAAATCAAGAGCACAGAAGGGAAAATCAGGGAAAGCAAAGGGTATATGTGAATATTATAGGTCAAATGGGTCTGAAAATGAAACCTCTGAGAATGATCAAACTACAACATTAACACAGGCTAAAAGAGTCAAGAAAAGAATATTCGAAAAAACAAGAAGCGATAAAAATAATAAAAAACAAGATGCCGCCAATATATCAGAAAATGATGACTCAAGCCATGATCAAGAAAATACAAGTAAGAAATCTAAAATTGAAAAGAATACAAAAAAGCCAAAGAAAGGTCAGATAAAAAAGAAAAAAGTAGTTTATTCGTCGTCTTCTGAGTCAGTAGAAGAAATTGATGATGAAGTTGGTACGTCTGAAGAAGAAATCTCGGACTTGGATGAAAACAAGTGCATTGAATGCACAGAAAATTTTTACAAAACTAAATCATCCGAGGATTGGATTAAATGTTCAGTTTGTTCAGGATGGTTGCATGAGTTTTGTACTATGTATGGACGTTTGTGTAATTATTGTGGACGAAAAGCTAAGAGGGAAGCTATGAAGAAAACAAGCCACTAA
- Protein Sequence
- MSRRYERKTLRASWSAEDLEKAMQCVRSKEMGVNEASRNFNIPSRTLRRHLITGRSKVPLGRNPVFSNKCEKKLVAHIKKLESVGFAPERKDVKEMAFQLAEKLNIKNPFSKTNEVAGNVWFTGFMARNPELSQRKSEGLSLSRAYGVNREDVKEFFDLLTKIYEEHDFTNHPEDIFNMDESGIQINNKPGKVIATKGARDVYTLTSCEKPGPSSVKAVIMSKTPQKDKSSETQETPNKLLSTIHPVPVIPVMSSKRKQKAVVLTSTENIEKRKAIIRKRKPKVQPKEKVLTKKAKGKKTGEKKATKNKDPDMTDISEDENTDQAKNLKQTKSRAQKGKSGKAKGICEYYRSNGSENETSENDQTTTLTQAKRVKKRIFEKTRSDKNNKKQDAANISENDDSSHDQENTSKKSKIEKNTKKPKKGQIKKKKVVYSSSSESVEEIDDEVGTSEEEISDLDENKCIECTENFYKTKSSEDWIKCSVCSGWLHEFCTMYGRLCNYCGRKAKREAMKKTSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -