Basic Information

Insect: Lycia hirtaria
Gene Symbol: clz9
Assembly: GCA_947563715.1
Location: OX387375.1:51629312-51631957[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.1e-11 3.5e-08 33.7 0.0 1 34 8 40 8 46 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.1e-11	3.5e-08	33.7	0.0	1	34	8	40	8	46	0.94

Sequence Information

Coding Sequence: ATGGCACCGGTAAAAAACTATACCCCAGAACAAATGGGCCGTGCTCTGGAGGCAGTAAGGAAAGGACAGAGTGTAAGCGCTGCAGCCAAAAAATATGGGGTACCTAGAATTACTTTGCATAATAAGAGCACAGGTAAAAGTCCAGCAGTGTGCTCCATGGGCCCATCGTCAGTTTTAACAAAGGACGAAGAATCTATTTTGGTTGAATGGTTGTTTGCTATGTCAGCAAGGCACTGTCCAGTGGCGAAAGAACAACTACTTGACAGTGTCCAAGCTATTGTGAAATCGAATAATAAAGAAACACCATTCACTGATGGAAGGCCAGGGCGAAAATGGTATCAGGCGTTCCTTACACGACACCCTGAAGTGTCCGAAAGGCTAGCACAAAATTTGACGACATCAAGAGAAGCTGTAAATGAAAACCAAATAACTAGCTGGTTTTCCGAAGTTAATGATTATTTAGTAGAAAATGGCCTTGGTGAAGTTATGAAGGATCCTACAAGAATATTCAATACGGATGAAAGTGCCTTCTTCCTAAATCCTAACCCCGGACAAGTTTTGGTCAAAAAAGGCGACAAAAACGTATATAGCGTTTCAGGCAACGAAAAAGAAAATTTAACTGTCCTTGTTACAGCCAATGCAGCAGGGCAAATAGCCCCACCAATGGTTGTGTTTGCCTATGAGCGAATACCAAAACATGTTGCGGATGGTATTCCGGAGTCATGGGCCATAGGCAAATCAGAAAGCGGCTGGATGTGCAGCAGCACATTTTATGAGTACGTCACGAATGTATTCTACCCATGGATTATTGAAAACAAAATAAAACTCCCGGTAGTTTTTTTCCTTGATGGCCACGCGTCACACGTCACGAAACATTTATCGGATTTTTGTTCTGATAAGCAAATCGAAATCATTGCGCTGTACCCTAACAGCACTCACATTTTACAGCCAATGGATATAGCAGTATTCCGTCCATTAAAATTATTTTGGCGAAAACATGTGCGGAAATGGAAGACTGAGAACTTAGGTCAACACGTCCAAAAAGACAAATTTGCAATGATTTTAAAATGTGCTCTGGACGAACTCTCGCCAGAAACTATAAAAAATGGATTTAGAGCTGGTGGTTTGTTCCCGTTTGGGCCAGAATATGTGGACTTTTCAAAAATGCATGCGCATAACCGAAGATTGACAACTGCTGATAAAGATTTGAAAAAACAAGACTCAGACTTTTTCTTTAAACTGGAACAGGAGATAGTAAATGCGTTTACACAATCAAAACTGGATCTTTATGAAAGATGTTTCTATACCTCAAGAACTGATTTAAATGACATGTTGCCACCCGAAGATTTAACCATGTATGTGATTTGGGCCAAATACAAAAACTTGTGCCATGCAAACAGAAACGAAAATTACGAACATAAAAATCAAGAAGCTGCATCAGTGCAAGAACAAAATAAGAGGCCAGATTATGACAGTAGTCCTGTAGAATCATATGAAATGAATAAAAAAAACACCGTCATAGTCACTAAGACATCTCTCGAAGATGTGCCGTCGACATCATATGCAGCAATGCTCACGGACAAAGAATCTGATGCTTTTAAGGTTTTACCACACACTGAAAATAAGCCAGTTGTTTATACTGATACCATTGACATACACAAAAACCAGGAATTGATCAACCTTACCCATAATACTCCGAATAAAAACCCGCCACCGAGTAGTTTTGCAGAACTCATGTTAAAAGAAAAAAACATTACAGTGCCTTCCCCATTTAAAAAAGCTCTTTTCTGGCCGGAGCCCACTATAAAAAAGAAAGGAAGAATGCCAAAAGAAAAGTTACCATCGGCAATCACTAGCAAAGCTTGGAAAGAATTTCACCAGAAAAAAGAATTAGATAAAAAAACAAAGGACGAAGAAAAAGAAAAAAGAAAACAGGAAAGAATTGATAAAAAGGCTAAAAAAGATGAACAGATGAAAAATAGAAAACGAAACGAAAACAACTCCAAATGTAAAAAACGTCGAAAGCTATCTGTTACTTCAAGTGACTCCGAAGACAGCAATATAACATACGTAGAATCAGGAGAAAGCGACATTGAGATTGAAAGAGATTCGGAAAATGATAGTATTACTATGGAAAATACTAATATACAGGCTTATTTTGCAGAAGAAATTGTAGAAACGACAGAATATAAACCAATAGAAGACGATGATAAAGAGAATAATGAGATCAACAAAAACACAGCAGTAAAAGAACAAATTGTTTTAGACAAAAATCCAGATCATACAATAAAACTACTAGACAACGTTGAGGTGCAAATGATACTCGACCATAAAACTGGAACATTTAAGGTTTGCAAAAAACGCAAATCAGATGGGCCTAAAGTAGGAAAGCATGTTTTGGTCAAATTTCATGGCAAAAATATGAAAAAGACTTACAGATACGTATGTACGATACAAGACGTTTCTGAAGAGAGGTTAGTAGTACAAGGGCTGCGTAGCTGTAAGTCGAAAGAAAAATTTAAAATCATAGAAAATGACGTGTCCATTATTGAAGAGTCTGATATTTTGAAATATTTGCCAAGCCCTGTAAAACAAAATAATTATTTTGTATTTCCACACGCAATTGATATAAAAGAAGCTATATAG
Protein Sequence: MAPVKNYTPEQMGRALEAVRKGQSVSAAAKKYGVPRITLHNKSTGKSPAVCSMGPSSVLTKDEESILVEWLFAMSARHCPVAKEQLLDSVQAIVKSNNKETPFTDGRPGRKWYQAFLTRHPEVSERLAQNLTTSREAVNENQITSWFSEVNDYLVENGLGEVMKDPTRIFNTDESAFFLNPNPGQVLVKKGDKNVYSVSGNEKENLTVLVTANAAGQIAPPMVVFAYERIPKHVADGIPESWAIGKSESGWMCSSTFYEYVTNVFYPWIIENKIKLPVVFFLDGHASHVTKHLSDFCSDKQIEIIALYPNSTHILQPMDIAVFRPLKLFWRKHVRKWKTENLGQHVQKDKFAMILKCALDELSPETIKNGFRAGGLFPFGPEYVDFSKMHAHNRRLTTADKDLKKQDSDFFFKLEQEIVNAFTQSKLDLYERCFYTSRTDLNDMLPPEDLTMYVIWAKYKNLCHANRNENYEHKNQEAASVQEQNKRPDYDSSPVESYEMNKKNTVIVTKTSLEDVPSTSYAAMLTDKESDAFKVLPHTENKPVVYTDTIDIHKNQELINLTHNTPNKNPPPSSFAELMLKEKNITVPSPFKKALFWPEPTIKKKGRMPKEKLPSAITSKAWKEFHQKKELDKKTKDEEKEKRKQERIDKKAKKDEQMKNRKRNENNSKCKKRRKLSVTSSDSEDSNITYVESGESDIEIERDSENDSITMENTNIQAYFAEEIVETTEYKPIEDDDKENNEINKNTAVKEQIVLDKNPDHTIKLLDNVEVQMILDHKTGTFKVCKKRKSDGPKVGKHVLVKFHGKNMKKTYRYVCTIQDVSEERLVVQGLRSCKSKEKFKIIENDVSIIEESDILKYLPSPVKQNNYFVFPHAIDIKEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00701892;
90% Identity: -
80% Identity: -