Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387381.1:3760983-3786523[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-08 1.3e-05 25.4 0.0 2 40 91 129 90 134 0.90

2 4 4.2e-11 2.9e-08 33.9 0.1 1 40 198 237 198 242 0.90

3 4 2.8e-08 2e-05 24.9 0.1 1 40 468 507 468 512 0.90

4 4 1.3e-11 9.3e-09 35.5 0.0 2 37 594 629 593 633 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-08	1.3e-05	25.4	0.0	2	40	91	129	90	134	0.90
2	4	4.2e-11	2.9e-08	33.9	0.1	1	40	198	237	198	242	0.90
3	4	2.8e-08	2e-05	24.9	0.1	1	40	468	507	468	512	0.90
4	4	1.3e-11	9.3e-09	35.5	0.0	2	37	594	629	593	633	0.92

Sequence Information

Coding Sequence: ATGTACCCGAGCTTGTTCATGATCGGCATGGTGGGATACAGCAGACTGAGCGTGCGGCGCGACGTCGCGCTCTGCAAGTACATGTGGCGCGTGGTGCGCGGAGAGCTGCACCACCCCGTGATACTGGAGGCGCTGCGGCTGTGTGCGCCGGACGAGGCTGTGGGCCGGCGGCGCACGCTGACTACATTTAGCGTCCCGCATTTCGAGATCATCGAAGTCAAGCCTTATTTGCCTAAGAAAAGAACATTCAAGTCGTATGCGAAATGGTCGGACGATGCCCTAAATTCAGCCGTGGAATCGGTACGAAGGAAAGAAATGAATCTGAGAACAGCATCTCTCTGTTTTGGGATTCCACGAACCACGATCTTGTGCTATCTCAACAGAAACAGCTCCGCTAGAAAGCAACTAGGACGCACTCCGATCATGGACGAAGAGCAAGAGAACGCACTGATCGGCACTATTATTGAAACTGGACAACGCCCTACTCCGAAGTACATTAGACGACAAGCTTTTATTTTTTACGTTTTAAAAAAAATTAAGACTAAAATATTGCGCCACCGCCGTACCAGACGAAACAAACGCGTAGAATGGTCGGAAGAAGCCTTGCGAGCTGCTGTAGAAGCAGTAAAGTGCAAAGAAATGAGCCTAAGCACCGCCTCTGCCTTCTATGAAATCCCTCGAACTACGATTTGGGACTATGTTTCCAGAAACAGTACTAACAGGATGCTCTGCGGACGCAGACCGGTGATGAACGAAGCACAGGAGAACGAACTAGTCAACATAATTATTGAATCTGGGAGACGTCCTACTCCAATGTATATAAGAAGACAAGCTTATATTTTTTGCGAAAAAATCGATTCCAAGACAAATAATTTCAATAAAACTAAAGGCGTCGCTGGACGTTTAACATACGATTCAGCGCTATACTCTATAGAAATACTACCTGAGAAGCAAAAAGTGCGGAAAAGTTTAAGTTTGTCAATGAAGTTAAAGATAATAAGAAGGATGGAAAAAGGAGACAAAGCAACAAATGTTGGCAGAGATTTTAGCCTCTCAGAATCAACTGTGAGAACCATTTATAAAAATCGAGAAAAAATCAAACTTTCCGGAGAAAGTTCAACACCCACAAGTGCAACAAAAGTTACTCGTACGAGGTTCTCTGCCATGGAGAAAATGGAGAAGTTGCTGACAGCCTGGATCGAAGATTTAAATAAGAAGAACACGCCTCTAAGTCAAGATCTTATATGTACAAAAGCAAAATCTTTGTATGAGAGGTTGAAAGCACAAGAAGGTGAAGAGAGCTCCAACTTGACTTTTTCCGCTAGCAGAGACGTTTTAAAAAATGTTAAGACTGATATGTTGTGCAGCCGCCGTACCAGACGAAACAAACGCGCGGAATGGTCGGAAGAAGCCTTGCGAGCTGCTGTAGAAGCAGTAAAGTGCAAAGAAATGAGCCCAAACACCGCCTCTGCCTTCTATAAAATCCCTCGAAGTACGATTCGGGACTATGTTTCCAGAAACAGTACTAACAGGATGCTCTGCGGCCGCAGACCGGTGATGAACGAAGCACAGGAGAACGAACTAGTCAGCATAATTATTGAATCTGGGAGACGTCCTACTCCAATGTTTATAAGAAAACAAGCGTATATTTTTTCCGAAAAATTCGATTCTAAGACAAATAATTTCAATAAAACTAAAGGCGTCGCTGGACACGTTTTTAAAAATATTAAAATTGAAGAGCATCAAATAATACGAGGTAATAAAAAGGCGAAATGGTCAGAAGCTGCCTTACAAGCGGCCTTGAAAGCAGTCAGGCAAGGCAAAATGAAGATAACCAATGCCTGTGTCCATTTTGGGATCCCACGATCTACTCTCCATGATTATCTGACTACAAATAGCATCGGCAAAAAGCACAACGGACGAAAACCGCTCCTGAACGAAGATCAAGAAAACGAACTTATCGGAAAAATTATTGAATCTGAGGTAGAAGAAGGTTTTCCAGAATGGGTGTCTATCTACTTCACGGAGGTGGCAGACCGCGAGGCTATGAAATGCAACCTGTGCGAGGTGGAGATAGATGTAGCGTCCAAGTCTTCAACACTCATAGATCACATGAGGGATTCACATAAGGACATCTACGATCTTCACAAGGACAATCCAGAGGCAACAGTCGGGTTTCGTGTGGAATTCTTGCATATGAATGTATTGAAGGAAGATGAAGTTGGTGAAGCGCAAGTGCAGCCAGTGATCCTGGGAGAGGTATGCGAGACTACTGATGCAGAGGTGGCCGAGGTGGTGGACACTACAGCCGAGACTGAGAGTGATGTTATCAACATGCAGTACGTCATGATGGGCACTAAAAGGAAACATACAAAAAGCTCCACTACCACTACTACTTCTGAGCAACGCAAACGTAGCTGGATCTGGAAGTACTTCGACCAGCTCAGCAACATCGTGTACCGCTGCTCTGTGTGCAACGTGGTACTCTCTACCAAGGGCAGCAACACCAACAACCTGAACCGACACATGCGCACCAGGCACCCGGACACATTCAAGTCGGAGAGGTTCGGGGAGGCCATGGCGAAAGTCAACATCGAGGGTATAGGCGAGGAAGACACACCGTACGCTGTTAAGACGGAGGAGATCTATGCTTGCAATGACAACCAAACGCCGAAGTCGCGTCGCAGCTGGATCTGGTCGTACTTCGATTACGTGTCGACTACGCAGGCAAAGTGCAAGTTGTGCCAGCGCCTCATCAACCACGGCGGCAACGCTACCGGCAACATGAACAGACATCTCAAGACCATACACCACAAGACGGACACTGAACGAAATGCCCTGGAGAGGTCCTGGGTATGGAAGGTGTTCGTCCGCGAGCCGAGTTCGTACACCTGCAAGATCTGCCAGCACCAGCTGACGCGCACCAACACCGACAGCGACATGCAGTCCATCACCAGCCATCTCAAGAAAGAGCACGGTGTGGTCTCCGGAGACCAGATCATAACCGGCACCGAGTGCGACCTGGGGGACGATTGA
Protein Sequence: MYPSLFMIGMVGYSRLSVRRDVALCKYMWRVVRGELHHPVILEALRLCAPDEAVGRRRTLTTFSVPHFEIIEVKPYLPKKRTFKSYAKWSDDALNSAVESVRRKEMNLRTASLCFGIPRTTILCYLNRNSSARKQLGRTPIMDEEQENALIGTIIETGQRPTPKYIRRQAFIFYVLKKIKTKILRHRRTRRNKRVEWSEEALRAAVEAVKCKEMSLSTASAFYEIPRTTIWDYVSRNSTNRMLCGRRPVMNEAQENELVNIIIESGRRPTPMYIRRQAYIFCEKIDSKTNNFNKTKGVAGRLTYDSALYSIEILPEKQKVRKSLSLSMKLKIIRRMEKGDKATNVGRDFSLSESTVRTIYKNREKIKLSGESSTPTSATKVTRTRFSAMEKMEKLLTAWIEDLNKKNTPLSQDLICTKAKSLYERLKAQEGEESSNLTFSASRDVLKNVKTDMLCSRRTRRNKRAEWSEEALRAAVEAVKCKEMSPNTASAFYKIPRSTIRDYVSRNSTNRMLCGRRPVMNEAQENELVSIIIESGRRPTPMFIRKQAYIFSEKFDSKTNNFNKTKGVAGHVFKNIKIEEHQIIRGNKKAKWSEAALQAALKAVRQGKMKITNACVHFGIPRSTLHDYLTTNSIGKKHNGRKPLLNEDQENELIGKIIESEVEEGFPEWVSIYFTEVADREAMKCNLCEVEIDVASKSSTLIDHMRDSHKDIYDLHKDNPEATVGFRVEFLHMNVLKEDEVGEAQVQPVILGEVCETTDAEVAEVVDTTAETESDVINMQYVMMGTKRKHTKSSTTTTTSEQRKRSWIWKYFDQLSNIVYRCSVCNVVLSTKGSNTNNLNRHMRTRHPDTFKSERFGEAMAKVNIEGIGEEDTPYAVKTEEIYACNDNQTPKSRRSWIWSYFDYVSTTQAKCKLCQRLINHGGNATGNMNRHLKTIHHKTDTERNALERSWVWKVFVREPSSYTCKICQHQLTRTNTDSDMQSITSHLKKEHGVVSGDQIITGTECDLGDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00926803;
90% Identity: iTF_00926803;
80% Identity: iTF_00926803;