Lphl025756.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995186.1:8301082-8305934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 15 6.8 0.0 2 23 177 198 176 198 0.95 2 12 1.8e-05 0.0015 19.4 7.3 1 23 204 227 204 227 0.97 3 12 3.8 3.1e+02 2.7 2.6 1 23 241 263 241 263 0.87 4 12 0.0011 0.093 13.8 3.4 1 23 569 591 569 591 0.98 5 12 0.00075 0.062 14.3 4.0 2 23 597 619 596 619 0.97 6 12 0.015 1.2 10.2 4.6 2 19 628 645 627 649 0.92 7 12 0.0079 0.65 11.1 6.7 2 23 653 674 652 674 0.97 8 12 0.0086 0.71 11.0 2.0 2 23 688 710 687 710 0.96 9 12 0.00019 0.016 16.2 1.9 1 23 716 738 716 738 0.98 10 12 0.092 7.6 7.7 4.3 3 23 746 766 745 766 0.97 11 12 0.00075 0.062 14.3 2.6 1 23 772 795 772 795 0.97 12 12 0.38 32 5.8 0.1 3 23 801 822 799 822 0.95
Sequence Information
- Coding Sequence
- ATGAATGAATTAGACGAAATCGAACCTGTACCTCTTACTACCAAGAACGCTGTAAAGTTCTTACTGGACGGAACGTTGAGGTTAAAAGTGTGTAGATATTGCCTTACAATCTGTACAGATCTATCGGAATTGGACGAGATACTCGAAATCGCCATTAATGGAGGGTTACATGAAGTTACTATTAAAGATATAGTTGCTAGTTTCCATCCATTCAAGGTGGATGTCGATACTAGTTTCCCGAACAAAATATGTAAAACATGTCTCCATTCCGCAATAAATGCATATCTGTTTACACAGCAATGCGAAAGAGCTGAACGAGCATTGCGTAATTGTTTCGATGACATTAATGAAAAATATGACAAATTAGATCCTATTGTACCAGTTAAAAAACGAGGAAAACGCAAACTGAACCCGAATCCGAACATTCTTTATGTTGAAAATAAAAATGTTATTGACTATGCTGAACCTATTATAAATATTATTAACACAAGTTCAATAATTGTTGATAACGTTGAAACGAAAAATTTGGAGTGCCAGAAATGCTGGCTGGTATTACCCAGTCCACAGTCATTAGTAAATCACGAGGAGTCGCATCCTAAATCCATGTGGTATCATTGTAAACTATGTGGAAAATCGTTTGTCAAAAGATTCCATCTCAAGCAACATATGAAAAAATTACACAAGTCAGATAAAATAGAACCTATACAATTGCCTGACGGGTATAAATGCAACAAATGCGGTGATTTTAGCAAAACTTTAGGCGAACATTTTCAACACATTGAGAAGCACAAGTTTAAAAGTATCTTACAGTATATGATTAAGAGGCAGATGGATAGACTGTGTGTCCTGTGCTTGGAGGACGGGCTAAGGATGACGAGCCTCAGTGAAAATGTATGTTTACATGGAGGTTACCCGGGATTGCACGGTGAATATTCTATCCAGGATATTATATTATCAGTATTCTCACATAAGAATCACCAATGCTACCAAATTTCAAGGAGCTTTACTGCCATCTCCCTACATTGTCTACAAGTGGCATTGACAACAACAAATCTGAGCAGAAAGTTTAAACTATCAACATACGTCTATCAATACCAATTTTTAGCTCCTAAGGCTGATTTACGTCAGTTAAAACATAATTCTTTTAAGAAACTTAAGACGAGTCATGTAACAATTGAAAAGGGAGAAACAGGTTGTAATAAGGAACAAAATCTTTGCAAAATCCCATTTAGCAATATTGGAAACAAAATATGCGAATCATGTCTTAACCATTCTATTAGTTCGTTTGTTTTCACATTAAAAATAGACCATGTTAAAAATAGATTAAACACATGTGTAACCCAACTGTTATACAATTTAGATAGTTTAAAAGAAACCAAAAAGACAGTTATGATTGAAATATCAAATGATGTTATACTACCAATGTTTACATACGAGGATGAAGATAAAATAAGTGAGGTAGATGAATCAGAGTTAAAAATAGAGGTCCTGGAAGATGAATTTAGAGAAGAATCGAAATCAGAGTCGGAGAGTGAAGAGGAGAATCCAGCAAAAAAAGTAACAAAGACATACAGTAGGACACTATTGAACGGATATAAATCAGATAACCAATCCATGTTAAGCAATAAAGTGAAAGATGAATGTGATGAATTTTTGAATTTTAAAACAAAGGTAAAGATATCCAGAAAACCTTTACAGTGCGTTTTCACATGTCCATTTTGTAATAAATATTTCATATCAGATTACTTCTTTAAGAAACACATATTAAAGCATGTATATAAAACATCTAAGTGCAATGACTGCTCAAAGCAATTTATATCTAGATTTCATCTGTTTGAGCACACAAAAATGATGCATATACTAAAGAATAGCAGTTACTGTTCATGTAAAACTTGTGGCAGGACATTTACTAGTATAGACAAATTAAAAATACATGAAGAATGTCACAAAATGAAAGAATGTTACCTATGCAACAAACATTTTAAGACGCAAAAGCATTTTGATGTACACCTTCAGCGACATGCTGTGAAATTGAGATTACTAAGAAAAAAAGAAAGGCAAACATGCAGTTTCTGTGAGAAATCATGTTCGAATGAGAACGAACTATCGTTACATGTGAATAAAGTGCACTTACAAATGAAACCGTACAATTGTGATATGTGCGAGAAGAATTATTATACGGAGTACAATTTGAACAGTCATAAGCGATTACATAGTTTATTCTCAAAAGAGAATTGCACATTTTGCAGCAAAGTGTTCAAGTGTAGGAGAAGTTTAGTGGTGCATGTGAGGAAGCATATAGGTATAAAGCCCCATCAGTGTCCGGCTTGCCGACAATCATTTTACTCGGACAGCCAAATGAAGAAACATATGAAAGTCTCGCACGGAGGTCAATATTGGTGTCGGTTGTGTAAAGCCATTCTTGAAACTAGTAGTGACTTAAAAGGACATATAAGTGTTGTACATAGTGCTATGTAA
- Protein Sequence
- MNELDEIEPVPLTTKNAVKFLLDGTLRLKVCRYCLTICTDLSELDEILEIAINGGLHEVTIKDIVASFHPFKVDVDTSFPNKICKTCLHSAINAYLFTQQCERAERALRNCFDDINEKYDKLDPIVPVKKRGKRKLNPNPNILYVENKNVIDYAEPIINIINTSSIIVDNVETKNLECQKCWLVLPSPQSLVNHEESHPKSMWYHCKLCGKSFVKRFHLKQHMKKLHKSDKIEPIQLPDGYKCNKCGDFSKTLGEHFQHIEKHKFKSILQYMIKRQMDRLCVLCLEDGLRMTSLSENVCLHGGYPGLHGEYSIQDIILSVFSHKNHQCYQISRSFTAISLHCLQVALTTTNLSRKFKLSTYVYQYQFLAPKADLRQLKHNSFKKLKTSHVTIEKGETGCNKEQNLCKIPFSNIGNKICESCLNHSISSFVFTLKIDHVKNRLNTCVTQLLYNLDSLKETKKTVMIEISNDVILPMFTYEDEDKISEVDESELKIEVLEDEFREESKSESESEEENPAKKVTKTYSRTLLNGYKSDNQSMLSNKVKDECDEFLNFKTKVKISRKPLQCVFTCPFCNKYFISDYFFKKHILKHVYKTSKCNDCSKQFISRFHLFEHTKMMHILKNSSYCSCKTCGRTFTSIDKLKIHEECHKMKECYLCNKHFKTQKHFDVHLQRHAVKLRLLRKKERQTCSFCEKSCSNENELSLHVNKVHLQMKPYNCDMCEKNYYTEYNLNSHKRLHSLFSKENCTFCSKVFKCRRSLVVHVRKHIGIKPHQCPACRQSFYSDSQMKKHMKVSHGGQYWCRLCKAILETSSDLKGHISVVHSAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -