Lphl014105.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- ken
- Assembly
- GCA_905333005.1
- Location
- HG995164.1:22825493-22829002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.089 13.8 1.0 1 23 148 170 148 170 0.98 2 12 1.2 1e+02 4.2 3.4 1 23 176 199 176 199 0.96 3 12 5.5e-06 0.00046 21.0 1.4 1 23 208 231 208 231 0.98 4 12 0.00019 0.016 16.2 0.4 2 21 344 363 343 364 0.94 5 12 0.012 1 10.5 2.1 1 23 395 418 395 418 0.95 6 12 5.9e-05 0.0049 17.8 0.9 2 23 424 445 424 445 0.96 7 12 0.52 43 5.4 6.4 1 21 448 468 448 469 0.92 8 12 3.2e-05 0.0027 18.6 1.4 1 23 481 504 481 504 0.95 9 12 0.00042 0.035 15.1 0.4 1 23 510 532 510 532 0.96 10 12 9.5 7.9e+02 1.4 1.1 5 23 541 559 538 559 0.89 11 12 0.064 5.3 8.2 0.6 1 23 565 588 565 588 0.86 12 12 0.00035 0.029 15.3 1.4 1 23 596 619 596 619 0.97
Sequence Information
- Coding Sequence
- ATGAATAGAGAGATTGATGTAAAAGCCATATTATCGCATATTATACGTGGCGATGGATTAAACAAATGCCGAATATGTATGGGTGATACAAAAGAAGGCCAAGTGCATTTAGAAGATACTGTTATGATGGATGGAGATAAAGCTATTACATTATCTGACATTTTAAGAATCATCACTGGAATAGAGGTGCTGTTAGAAGAAGACCTGCCAGCTGTACTGTGTTCAACATGTGCCTTGTGTGCACTTAATGCAGCTACATTTCGCTTATTATGTCACCAAGCTGCTGATCAATGGAAACTATCAATAAAGCTACTAAGTAGCCTACCATCAAAATATAAAAACACACTATTTGCCATTCTAGAAAACAATCAAATTACAATAGTTGACAGTGAATCGGCACACATGTCTGATCATGTCAAAAGGCACTTATCAACCCACAGCTACACTTGTGAGAAGTGTGGTATCAATCTGAAAACAAAGCTAGGATATACACAGCACCAAAGACTGCACACGGGAGAGAAGCCCTATGCCTGTAAATACTGCTGTGAAACATTCTCAGCCTCTTCTCGGAGATCAGAACATATTCGTAAGACACACAATACCAATGAAGTTGTATTGAACTATGTGTGCGATATATGTCATGCTCGATTTCGGTTGCCATACAGGTTACAGAGACATATGCGAACTGTACATAAAAAATCTGGAGTTCTGAAGCAGTTTCAATGTGATATGGAGAGAGACATAGATCTGCCCGAGGGGTTGTGTGGCACCTGCAGCAACAGTGCGGTCTCTGCATGGCACTTTCAACGACTTTGTCAGAACTCTGTTTATTGTTGGTGGAATACAATTGATAATCTCTTGCGGACATCCAAAGTCGCTAAGGACAATTCAAGTTTATATATCTATTTAGACGAAAATAAAAATCATTTTGTAGACCAACATCATAGCAATAACGCTGTGGATACATTAAATAACATTGAAGGAATGAAAAAAAAGAAGAAAAGGAGAGGAATAAAATGTACAGGACTAAAATGTTTTGATTGTGGGAAAGAATTCACTATGGCGAACTATTTAAACCAACATTTAAAAAATACCATGAAGAGAGTTTGCACTCAGTGTGCCAAGATTTTGCCTAGGGAAAAGTTAGGGAAACATCTCGGCAATAAGCATAATAAAATTGTTCATACATGTGAAGACTGCTACAAGTTGTTTGACGAAAGGGAACAGTTGAGTCAACATAGGATGTTGTACCACGGCAGCACGGCGGCTCAATGCACAGTTTGTGGACACGGATTCAAGAACGAGAGATCTCTGAGAGCCCATATGTATGCGCATACGCTATTTAACTGTACGTCGTGCAACAAAGCTTTTGAAAATCGAAAATGTTATTTGCACCACCATCTTAGGTGTAAAGAGAAATCATTATCAACCGACTGTATTTACGAATGCCACGACTGCGGTAACACATACACGAAAAAGGCATCATTGAAGATGCATATCATTTTAAAACACATAAACGTTCTGCCGTACGTTTGTCAGGTTTGCGGCAAACGATCTTCGACGTCAGCTCACAACAGAGCCCACGAAGCCATACACACCGAGAGGAAAGTGTACCAGTGTCACTGCGGGGCAAATATGCGCACACTGATAGGCTTTCAAATGCACCAACGGATACACTCGGGAGAGAAGCCGTACGAGTGTAAAGAGTGCGGCGAAAGGTTTCTATCGGCTTCGAGAAGACTTGATCATGTAAAGAGAAAGCACTGGACGACGAAGGAAATGATGCATAAATGCGACGAGTGTGATGCTTCCTTCCTTAGGCCATTCGAATTGAAAAATCACTTGAGAAATAGTCATTATTCCCGATTAAAGATGAATATTAAATGA
- Protein Sequence
- MNREIDVKAILSHIIRGDGLNKCRICMGDTKEGQVHLEDTVMMDGDKAITLSDILRIITGIEVLLEEDLPAVLCSTCALCALNAATFRLLCHQAADQWKLSIKLLSSLPSKYKNTLFAILENNQITIVDSESAHMSDHVKRHLSTHSYTCEKCGINLKTKLGYTQHQRLHTGEKPYACKYCCETFSASSRRSEHIRKTHNTNEVVLNYVCDICHARFRLPYRLQRHMRTVHKKSGVLKQFQCDMERDIDLPEGLCGTCSNSAVSAWHFQRLCQNSVYCWWNTIDNLLRTSKVAKDNSSLYIYLDENKNHFVDQHHSNNAVDTLNNIEGMKKKKKRRGIKCTGLKCFDCGKEFTMANYLNQHLKNTMKRVCTQCAKILPREKLGKHLGNKHNKIVHTCEDCYKLFDEREQLSQHRMLYHGSTAAQCTVCGHGFKNERSLRAHMYAHTLFNCTSCNKAFENRKCYLHHHLRCKEKSLSTDCIYECHDCGNTYTKKASLKMHIILKHINVLPYVCQVCGKRSSTSAHNRAHEAIHTERKVYQCHCGANMRTLIGFQMHQRIHSGEKPYECKECGERFLSASRRLDHVKRKHWTTKEMMHKCDECDASFLRPFELKNHLRNSHYSRLKMNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -