Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995183.1:938846-949656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.02 1.6 9.8 0.6 1 23 338 360 338 360 0.98

2 11 0.00011 0.009 17.0 5.0 1 23 367 389 367 390 0.95

3 11 0.06 4.9 8.3 1.8 1 23 394 416 394 416 0.97

4 11 0.076 6.3 8.0 1.1 1 23 421 444 421 444 0.96

5 11 0.011 0.87 10.7 0.1 2 23 449 471 448 471 0.93

6 11 1.1 94 4.3 0.2 3 20 485 502 484 504 0.92

7 11 1.3 1e+02 4.2 0.4 2 23 553 575 552 575 0.94

8 11 0.0015 0.12 13.4 0.6 2 20 591 609 590 612 0.89

9 11 0.00024 0.02 15.9 0.3 1 23 618 640 618 640 0.97

10 11 9.1e-06 0.00075 20.3 1.3 1 23 646 668 646 668 0.97

11 11 0.00013 0.011 16.7 4.1 1 23 674 697 674 697 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.02	1.6	9.8	0.6	1	23	338	360	338	360	0.98
2	11	0.00011	0.009	17.0	5.0	1	23	367	389	367	390	0.95
3	11	0.06	4.9	8.3	1.8	1	23	394	416	394	416	0.97
4	11	0.076	6.3	8.0	1.1	1	23	421	444	421	444	0.96
5	11	0.011	0.87	10.7	0.1	2	23	449	471	448	471	0.93
6	11	1.1	94	4.3	0.2	3	20	485	502	484	504	0.92
7	11	1.3	1e+02	4.2	0.4	2	23	553	575	552	575	0.94
8	11	0.0015	0.12	13.4	0.6	2	20	591	609	590	612	0.89
9	11	0.00024	0.02	15.9	0.3	1	23	618	640	618	640	0.97
10	11	9.1e-06	0.00075	20.3	1.3	1	23	646	668	646	668	0.97
11	11	0.00013	0.011	16.7	4.1	1	23	674	697	674	697	0.93

Sequence Information

Coding Sequence: ATGCGCTGTTGCGTTTCCCATTGTAAAAATGATTCTCGTCACATATCGAAGTCGCAGGGAATAACCTTTCACGTATTTCCAACGGAACCAACTCACCGCACTGCTTGGTTAAAGGCTGTTGGCAAAGAAAAATGGTCTCCAAAAGAAAGAAGTGCTGTCTGCTCTGAACATTTTATGCCTGAGGATTTATATGAAACAAAAAATGGCCTGAGAAAAGTAAGGCCTGGTGCCGTACCAATAGTTGTACAGGAATTAGCGAGTTGTGTATTTGAGGAGCCTGCCAATATAAAGGTTTGCAGGATCTGCCTCGGCATGGATACCAAGCTATTGGAGATGGGCGCATACAAGTTGGACCAGGCTTACGAGCATTTGACAGGAATTACGGTGTGCAGCGATGACAGCCTACCGCAGAGATTGTGCGCGGAGTGCGCGCAGAGGTTATTGAACTGTGATAAATTTAGGAAGAAGAGCATCCGGGCAAACACGCTCATGCTAGAGATTGTTAGGAAACAGAACTCGTTGACCATAGACAACATCAAAACAATAAACAGAGACAACAATGACCTCGCATCGCCATTAACAATAAAACATTACGACGTTGATAAATACGACTTGGATACACAACACACAGAACAAATGGAACAAACAGAACACACAGAAGAAGTCAAACACGAGAATCTAGAAATATTTATTTCTAACGATGTCACGGTGAAAGATGAAATCGACAATGACTTTGAAAATGACAGAAATATCGAGGACACCATCCATTACTCAACAGACGACAGCTTACCGCTAGAAGTACAAAGAAGGAAGAAGAGGAAAGAGAAGAAGGAAACGAAGAGAGTGAAGAAGAAAGTGGACCCACCGGAACCCAAAATCGATAGACGACGGAAACCATTCTTGAACACCGATTTGAATGAAACACTTTTCACGATAACCGATCTGAGCTTCGAGGAGCAGGTGGCGGAGATACAGAAGAGGCAGGACAGCTCCAACTACAAGAATGCAGTGTTCAAGTGTACGGAGTGCTTCAAGGGATTCCTGGACGAGGACGCTTACAACGGACACATGACCAGGCATACGGATCAATGCGGCGAGTTCGAGTGCGAGATCTGCAAGACGCACTTCAAGCAGCCGCACGCGCTGCGCAAGCACATCACCGCGCACCACACGCAGCGGTTCAGCTGCAACCAGTGCCCCTACGTCACCACGCACAGGCAGACGGCCCGGCTGCACGAGCGCTGGCACAAGGGCACCAAGTACCAGTGCCCGCACTGCCCCGACGAGTTTGTCAAGTTCACGACGTACATGGGGCACGTGCGCATCAAGCACCCCTCCGACTGGGTGTGCGGCCTGTGCGGCTACTCCTTCGTCAGCCAGAAGGGCATCGAGCTGCACAAGAAGCTCAAGCACCGCCTCGACAGCGGGGAGGTACCCGAGGACGGGCCGCTGTGCGAGCTGTGCAACGTACGCTTCGTGTCGCAGGAGGCGCACAGGAGACATCTGTCGCTGTCCGCGCGGCACGCCGACCCGGATGAGAACAAATCGAGGAAAGGAAGAAGGTCGAAGGAAACGGAGATGGAGAAGCGGCAGGAGAGGGAGTCGAGCGAGAAGAAGTTGTATCCTAGTCAGCTGAGGAGGGCGGAGGGCCCCATACCCTGCGAACAGTGCGGCCTCCAGCTGGAGGACTCGAGGGCGTACCACGGCCACTTCCGGCGCATGCACCCCGACAAGAACCGCACCAACTACCCGTCCATGAAGACGCCGTGCATGTGCGAGGTCTGCGGGAAGATGTTCCAGAGCGCGGCGCTGCTGCGCGACCACCGCTGGACGCACACGGGCGAGCGGCCGTTCGCGTGCGAGGCGTGCGGCAAGAGCTTCCGCATGCGGCAGCGGCTCGTGGCGCACCGCCGCGTGCACGCGCCGCGCCGCGCCTACGCCTGCGCCGTCTGCGGCAAGGGCTTCTCCACGCATAGCAACCGTCAGCGACACATGTTCATCCACACGGGGCTGAAGCCGTTCAAGTGCGAGATGTGCGGCAAGTGCTTCAAGCACGCGAGCGAGAAGCGCGCGCACGTCACGTACGTTCACCTCAAGAAGCCGTGGCCCAAGCGCGCGCGGGGGAAGCGCCGCCCCGAGCGACCCGACCGACCGGGCCAGTTACACCCTGTGGGGCTGCCGGGCGAGCTGGAGCCGGTGCAGCCGCTGTGGGCCTGCGACCCCAAGGACCTGCCGCTCGCCGACGACAAGCCGCTCTACTACAACCTCAAGATATAA
Protein Sequence: MRCCVSHCKNDSRHISKSQGITFHVFPTEPTHRTAWLKAVGKEKWSPKERSAVCSEHFMPEDLYETKNGLRKVRPGAVPIVVQELASCVFEEPANIKVCRICLGMDTKLLEMGAYKLDQAYEHLTGITVCSDDSLPQRLCAECAQRLLNCDKFRKKSIRANTLMLEIVRKQNSLTIDNIKTINRDNNDLASPLTIKHYDVDKYDLDTQHTEQMEQTEHTEEVKHENLEIFISNDVTVKDEIDNDFENDRNIEDTIHYSTDDSLPLEVQRRKKRKEKKETKRVKKKVDPPEPKIDRRRKPFLNTDLNETLFTITDLSFEEQVAEIQKRQDSSNYKNAVFKCTECFKGFLDEDAYNGHMTRHTDQCGEFECEICKTHFKQPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCPDEFVKFTTYMGHVRIKHPSDWVCGLCGYSFVSQKGIELHKKLKHRLDSGEVPEDGPLCELCNVRFVSQEAHRRHLSLSARHADPDENKSRKGRRSKETEMEKRQERESSEKKLYPSQLRRAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKTPCMCEVCGKMFQSAALLRDHRWTHTGERPFACEACGKSFRMRQRLVAHRRVHAPRRAYACAVCGKGFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHVTYVHLKKPWPKRARGKRRPERPDRPGQLHPVGLPGELEPVQPLWACDPKDLPLADDKPLYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00787122;
90% Identity: iTF_00787122;
80% Identity: iTF_00925781;