Lphl012017.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995177.1:12988724-12999966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.023 15.7 3.4 1 23 245 267 245 267 0.98 2 11 0.00018 0.015 16.3 6.6 1 23 273 295 273 295 0.96 3 11 0.0017 0.14 13.2 6.9 1 23 301 323 301 323 0.98 4 11 0.0013 0.11 13.6 1.0 1 23 329 351 329 351 0.96 5 11 1.1e-05 0.00088 20.1 0.9 1 23 357 379 357 379 0.97 6 11 4.8e-06 0.00039 21.2 0.0 1 23 385 407 385 407 0.98 7 11 2.3e-06 0.00019 22.2 1.5 1 23 412 434 412 434 0.97 8 11 1.4 1.2e+02 4.0 3.3 3 19 442 458 441 464 0.90 9 11 2.8e-05 0.0023 18.8 0.4 1 23 554 576 554 576 0.97 10 11 0.0013 0.11 13.6 3.3 1 23 640 662 640 662 0.96 11 11 2.9e-05 0.0024 18.7 4.9 1 23 672 694 672 694 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCGAGTAATGTCTCGGGCTTCGGTTATTCCTGGGGGTTTACAAGCACAGCAGACCCTACCAAATGTGAAGTGGATACTCCAAACAGCTTAAGCTACACCTTAGGAAACACAGTTTCTCCAGAAACAACACTGACTGTTATGTCACATAAGTCTCCGCAAGTACAAGAGAAAGTTGGTGCATTAGCCGTCACAGTTTCAGCAAACTCGGCAGCTCAAGTGACTAGGGTTGTAACATCTGGTATGCCAGTTGCAGGTCGGAAAGCCATGTTTGTCCTAAATGATACACCGCACAGCATCCATCACAAGAGTCCACAACAGAATCAAACTACTACAATACAGAGTCATGTTTTTTCAGCGGCAAACCTAGCATCCAAGCCGTTTATGACGCCAATTGGTCCAATACAGCTAACCGCAGAGGAATGTAATGAAATACTAATGAAAAGAGCTCTTCAAGCCCAAGGGATAGCAACACCAGTCATTGACGCTTCACAGTTAAACCACACTTTGCTTAATGGAGGATTAAAAAGTTTAGCGGAGGCAACAGCTCAGCAACAAACAGAAGCGATACAATCCACAACAGTCCCTCAACATCATCTAATACACGCAAAACAGGAACCGGGCACTGCAAATAATTCTCCAAAAACGGTATATTCACAGACGGAGATAATGCCAAGCACGGTGCTGGGAGCCGTGGCGCCTACTGTGAAGGAGCGACCGTACTCGTGCGACGAGTGTGGCAAGTCGTTTCTGCTGAAACACCACCTGACTACACACGCTAGGGTACATACCGGTGAGAGGCCGCACGTGTGTGGGCATTGCGGAAAGGCGTTCGCCCGGAAGCACTGTCTCAATACTCACCTGCTGCTGCACTCTGCGGATCGGCCCTACCGCTGCCACGAGTGCAAGATGGCCTTCACACTCAAACACCACCTCGTCACTCACTCCAGGGTGCACAGCCGCGACCGGCCGTTCATCTGCGGAGAGTGCGGGCGCGGGTTCCCGCTGAAGCGACACCTAGTTACGCACAGCAAGTACCACGCCGGCGAGCGGCCCTACGTCTGCAGCGAGTGCGGGGAGAGCTTCGCGCAGAAGGAGCACCTGGTGATGCACAGCCGGTTCCACGGGTCGCTGACGCCGTTCGTGTGCCCGGACTGCGGCGTGGCGTTCGCGCGCAAGTTCCAGCTCGTGAACCACGGCCGCGTGCACGGCCGCGTGCCGCACTCCTGCCCCGTCTGCGGCAAGGAGTTCATGCAGAAGAGGACGCTGGCCACACACATGAAAATGCATACCGGTGAAGGTGCTGTTGCCTGTTTAGAATGTGGTGAAGCGTTCAAATGCAAGTCCGAACTACTGCAGCATTGCAAAATGACAAGGCATTGTCTAAATCTATCTCAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATAGTGCAGGTGATTGGTGCTGATGGACAAATAATATCTGAAAAGGCAGGGGTCCCTGGCTATGCATGTCCCGAGTGCGGTTCATGTTTTAACACAAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGTGACCGCACGTGCGTCACCGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCCGGCCTCGTCGCAGCGCATCACGCCACGCACAATCAACCCATCCAGATCATAGCGTCCAACCCCAACAGTAATGTAGTTCACACACAAGTCATAGCAACGAACCATCATATAGCCCAGCCCAGACCTAAGCTCCATTTCTGTGTGGACTGCGGGAAAGGGTTTGCAGCCAAACACGGTCTCCTAGCTCATCATAGAAGGCATCCGGAGGGCAGCTGCACGCTGCGGACGCACGTGTGCAACCAGTGCGGCAAGGCCTTCTTCCAGAAGAACCACCTCATGCTACACCAGCGGCAACACATGGACCTACCGCCCAGAAATGTGACGAACCGCTCGGGGCAGGTAATCGGCAACCAGATTCTGGTGGGCGGGCGGCGCGCTCTGCTGGCGGGCCCGCAGCTGCACCTCGTGGACCGCGACGGCAAGACCGTGCCCGCACACATGGCGAACAAGCGACACGTTAGTACTAATGCTGATGTGAAAGAAGTCAGCGGAGTGGTCATCAGGTCTTCAACTGGTGCTGAACTGATCAAATATGAAATATGTCTTCCTCGACCGACGTCTGTGCAACAGATGGACTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSTADPTKCEVDTPNSLSYTLGNTVSPETTLTVMSHKSPQVQEKVGALAVTVSANSAAQVTRVVTSGMPVAGRKAMFVLNDTPHSIHHKSPQQNQTTTIQSHVFSAANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEATAQQQTEAIQSTTVPQHHLIHAKQEPGTANNSPKTVYSQTEIMPSTVLGAVAPTVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFICGECGRGFPLKRHLVTHSKYHAGERPYVCSECGESFAQKEHLVMHSRFHGSLTPFVCPDCGVAFARKFQLVNHGRVHGRVPHSCPVCGKEFMQKRTLATHMKMHTGEGAVACLECGEAFKCKSELLQHCKMTRHCLNLSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIVQVIGADGQIISEKAGVPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHATHNQPIQIIASNPNSNVVHTQVIATNHHIAQPRPKLHFCVDCGKGFAAKHGLLAHHRRHPEGSCTLRTHVCNQCGKAFFQKNHLMLHQRQHMDLPPRNVTNRSGQVIGNQILVGGRRALLAGPQLHLVDRDGKTVPAHMANKRHVSTNADVKEVSGVVIRSSTGAELIKYEICLPRPTSVQQMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289043;
- 90% Identity
- -
- 80% Identity
- -