Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995166.1:15413662-15420740[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4 3.3e+02 2.6 3.2 2 23 245 267 244 267 0.92

2 12 0.027 2.2 9.4 4.5 1 23 277 299 277 299 0.95

3 12 5.5e-05 0.0045 17.9 0.6 2 23 307 328 306 328 0.97

4 12 9e-05 0.0075 17.2 1.5 1 23 334 356 334 356 0.96

5 12 7.3e-05 0.0061 17.5 0.7 1 23 365 387 365 387 0.97

6 12 5.5e-06 0.00046 21.0 0.6 1 23 393 415 393 415 0.97

7 12 0.0015 0.13 13.3 6.2 1 23 421 443 421 443 0.99

8 12 9.6e-09 7.9e-07 29.7 1.9 1 23 449 471 449 471 0.99

9 12 4.3e-06 0.00036 21.4 2.1 1 23 477 499 477 499 0.99

10 12 0.00091 0.075 14.0 0.4 1 23 505 526 505 526 0.93

11 12 0.0057 0.47 11.5 1.2 1 23 532 554 532 554 0.95

12 12 6e-05 0.005 17.8 0.9 1 23 560 582 560 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4	3.3e+02	2.6	3.2	2	23	245	267	244	267	0.92
2	12	0.027	2.2	9.4	4.5	1	23	277	299	277	299	0.95
3	12	5.5e-05	0.0045	17.9	0.6	2	23	307	328	306	328	0.97
4	12	9e-05	0.0075	17.2	1.5	1	23	334	356	334	356	0.96
5	12	7.3e-05	0.0061	17.5	0.7	1	23	365	387	365	387	0.97
6	12	5.5e-06	0.00046	21.0	0.6	1	23	393	415	393	415	0.97
7	12	0.0015	0.13	13.3	6.2	1	23	421	443	421	443	0.99
8	12	9.6e-09	7.9e-07	29.7	1.9	1	23	449	471	449	471	0.99
9	12	4.3e-06	0.00036	21.4	2.1	1	23	477	499	477	499	0.99
10	12	0.00091	0.075	14.0	0.4	1	23	505	526	505	526	0.93
11	12	0.0057	0.47	11.5	1.2	1	23	532	554	532	554	0.95
12	12	6e-05	0.005	17.8	0.9	1	23	560	582	560	582	0.98

Sequence Information

Coding Sequence: ATGAATATAAATAGTTCAAACATGAGTAGCGATCTAGAAAGTGAAATTGCGACAACCGCTATTGTTGATCTTAATCAATCACATGTTATAATTACTACACAAAATATTGACGATCCTAAAAACGATGTTGTTGTAAAAATCGAAAAGGAAAATAAATTACATGATTTAGTATATGACATAAAAAGCATATGCCGGGCATGTCTTGTTACAGAAAAGAATATGATTTCACTATTTTCCTATACTAATAGTGAAGTATTGGCTAATATGTTCTTCCTTGCTACTTCCATCAAAATTAAACCTGAAGAAAGTCTACCTGTAAATGTGTGTAAATCATGTAAAAGGGAAATTGTAAAATCATACAATTTTATATTGAAGTGTGGTAAATCTAATAGCTATTTAAAATCTCTTTTTGACACAGAAACACCAAAGAACACAGATGCAGATTTAAGTGTTTCTAAAAACAACGAGATTTCTACTGACACAGCAGATATTAAAAAAGAAAACATAATTAACGAGAAAAACATAAAAAATGAAATTGACATTCATTCAATTATTGATGTTGAAGAAGAAGATGTTGAGTACCTGGAAGAGGAAATTTTAAGTAATGGAGATAACATAAAACATAATGATTTTAATTTAACTGATAGAAAAAATGTGAGAAATTCTGAATCAGACAAATTACACAAGAAAAGAATAAACAAAAAGAAAACTAAGACACAACAGAAGTTACTAAAGTGTGAATTTTGTTGTAAGATCTTCTTGAAATTGTCGTCATTGAAAAATCACATAGAACAAAAGCATAGTGTCAAAACCAATGTCTCCCGGCCATATCCATGCAAGGAGTGCAAGACATCCTTCCACTCAGAACACGATTTGCACCTACATTCCGCTATACACGTGCAGAAAAATAATACATGGACTTGTAATAAGTGTAACAAAGATTATCCTGGCAGGGGCAGCTTGCGGCGACACATCCAGCGGCACATGGAGTGGAAGCGACACGCCTGTGATTTGTGCGGCAAAACGTTCGCCGAGCTGTGTGCGCTGCGTCGCCACGAGCGCGTACACACCGGCGAGCAGCCGACGAAGAAATACTGCTGCGACATATGCGACAAGAGGTTCATGGACCGCGTGCTGTTAGCGACTCACGTGGCGACGCACACGGGCGAGCGCTCGCACTCGTGTGCGGAGTGCGGCAAGGCGTTCCGCTCGCGCCGCCTACTCGCGTCGCACGTGCGCGTGCACTCCGACGCCAAGCCCTACTCCTGCCGTTACTGCGCCAAACGGTTCCGTCACGAGTCGACGCGTAATACGCACCAGCGCACGCACACCGGCGAGAAGCCGTACGTGTGCTCCGTCTGCGGCAAGACCTTCATCCAGCACTCAAACCTCACGCTGCACATGCGGACGCACACAGGCGAAAAGCCATACAGTTGCGACTTCTGCGGTCGAAAGTTTTCGTCGGGATCTACTCTAAACTCCCATCGCCGCACTCATACCGGGGAAAAACCCTATAGCTGTCCTGTTTGTGGTAAAAGGTTCGCGCGCACCGACATACAGACGCACGTGCGGCGCCACACGGGCGAGCGGCCGTTCGCGTGCTGCGTCTGCAGCAAGAGCTTCGCCAGCGCCACGCGCCTGCGCGAACACAACCTCATTCACACCGGCGAAAAACCCTTCGAATGTGCAATCTGCTCTGAAAAATACAAGAGAAAGACGTATCTTGCGAGGCATTTGAAATGGCACGAGGCGGATTCAAAATTAAAGAACAACGAAGAGATTGTTTTCGGAGACGGCGACGATACCAACAATGTAAACCAACATAGTTCTATTGCAGAAGCGAATAAAGTCATAAATGATAACATAGATGATGAAGAAATAAGAGAGTGTCCATTAGAGGTGTCCCAGGAACTGATATTAGACGACAGTGATGTTAAGAACGAAGTGGTAGTAGTGGACGAGGGTCAACACAGCGTGGACTGTCAGAGTGGAGAAATGTGCGAGATCCACTACGAAGGGCAAAGCGTGGAGTTGATGGGAGATGAACAACTACCCGACACGACCATAGACGGGACACACGTCGGGAATCTGTATCAAGTGGACCAGAGCTTGGTGCAGATAGAAACCTCGGGCAATCAGGTCACTATACGAAAGATTACCAGTAAAATGACAGCCAATTTCTAA
Protein Sequence: MNINSSNMSSDLESEIATTAIVDLNQSHVIITTQNIDDPKNDVVVKIEKENKLHDLVYDIKSICRACLVTEKNMISLFSYTNSEVLANMFFLATSIKIKPEESLPVNVCKSCKREIVKSYNFILKCGKSNSYLKSLFDTETPKNTDADLSVSKNNEISTDTADIKKENIINEKNIKNEIDIHSIIDVEEEDVEYLEEEILSNGDNIKHNDFNLTDRKNVRNSESDKLHKKRINKKKTKTQQKLLKCEFCCKIFLKLSSLKNHIEQKHSVKTNVSRPYPCKECKTSFHSEHDLHLHSAIHVQKNNTWTCNKCNKDYPGRGSLRRHIQRHMEWKRHACDLCGKTFAELCALRRHERVHTGEQPTKKYCCDICDKRFMDRVLLATHVATHTGERSHSCAECGKAFRSRRLLASHVRVHSDAKPYSCRYCAKRFRHESTRNTHQRTHTGEKPYVCSVCGKTFIQHSNLTLHMRTHTGEKPYSCDFCGRKFSSGSTLNSHRRTHTGEKPYSCPVCGKRFARTDIQTHVRRHTGERPFACCVCSKSFASATRLREHNLIHTGEKPFECAICSEKYKRKTYLARHLKWHEADSKLKNNEEIVFGDGDDTNNVNQHSSIAEANKVINDNIDDEEIRECPLEVSQELILDDSDVKNEVVVVDEGQHSVDCQSGEMCEIHYEGQSVELMGDEQLPDTTIDGTHVGNLYQVDQSLVQIETSGNQVTIRKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00787019;
90% Identity: -
80% Identity: -