Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995176.1:4632501-4636480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.9e-06 0.00024 21.9 2.1 1 23 210 232 210 232 0.98

2 10 1.2e-05 0.001 19.9 6.8 1 23 238 260 238 260 0.98

3 10 1.2e-05 0.00097 20.0 2.4 1 23 266 288 266 288 0.98

4 10 6.4e-05 0.0053 17.7 1.6 3 23 296 316 295 316 0.99

5 10 0.00013 0.011 16.7 0.4 1 23 322 344 322 344 0.98

6 10 0.00012 0.0096 16.9 3.9 1 23 350 372 350 372 0.96

7 10 0.00011 0.009 16.9 1.0 1 23 378 400 378 400 0.98

8 10 6.3e-06 0.00052 20.8 0.6 3 23 408 428 406 428 0.98

9 10 1.6e-05 0.0013 19.6 1.8 1 23 434 456 434 456 0.99

10 10 0.00075 0.062 14.3 3.1 1 21 462 482 462 483 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.9e-06	0.00024	21.9	2.1	1	23	210	232	210	232	0.98
2	10	1.2e-05	0.001	19.9	6.8	1	23	238	260	238	260	0.98
3	10	1.2e-05	0.00097	20.0	2.4	1	23	266	288	266	288	0.98
4	10	6.4e-05	0.0053	17.7	1.6	3	23	296	316	295	316	0.99
5	10	0.00013	0.011	16.7	0.4	1	23	322	344	322	344	0.98
6	10	0.00012	0.0096	16.9	3.9	1	23	350	372	350	372	0.96
7	10	0.00011	0.009	16.9	1.0	1	23	378	400	378	400	0.98
8	10	6.3e-06	0.00052	20.8	0.6	3	23	408	428	406	428	0.98
9	10	1.6e-05	0.0013	19.6	1.8	1	23	434	456	434	456	0.99
10	10	0.00075	0.062	14.3	3.1	1	21	462	482	462	483	0.95

Sequence Information

Coding Sequence: ATGCCGAGGACTCAAGACAAATTACTAATCAAACGGCCGATGATCTTCAGAGGTAGTGTAATGGATATAAAACTAAATCATATAAAAATTGAAATTGAACCAATTGATAATTCAAATGCAATCCTAGAAATACCAGAAAGTAGGATTGAAATAAAAAAAGAATCAGAAATAGAACTTTCTAACGAAAAAATGTATGTATTTATAGAGCGAAATGTTATAAAAGTTAAAAAGGAATCATCAGTGAAAGAAGATTTATATATGAGTACATCCCATGAATCATCGTCTAAGGGACAAAACAAGATAACAATTAAGCAGGAAATTGAAATAGAACCAGAGTTTCCTGTCAATATGTCTAATTCGATATATTTGTCTGTACAAAATGATGGAAAAATCAAGGAAGATCTCGATTTAAAAAATGCCTACAATTTAATGTACTGTACATCAGTTGCACAAAATGATATGAATAATGAACAAAATGGAGATACTGGATCTTATGAAGATGATTCAAAACATGAAGATTACACTCAAGAAGATTTTGTAAGCGACGATGGCTTTTCATCCATCATTCAAGACTTTAATTCAAAAAATCTTGCAACAATTAGTGAAAATTTATCCGAGGAAAAACCGTTCAGTTGTAACATTTGTAGCCTGAGATTTTCGACGCGCTATTCAGTAACTAGACATATAAGGACACACACAGGCGAGAAACCATACCATTGTAACACATGTAATAGGTGTTTCACGTCAAAATGGAGCTTAAATAACCACCAACGAATACACATCGGTAAGAAGTCTTTTGTGTGCGATATTTGCGATTATAAATTTGTGCAGCAAAGTTGTTTGGTAAAGCATAAAAAGATACATACAGGTGAAAAACCTCACGGTTGTGAAGTCTGTGATCGCAAATTCAGTAGAAGGTGCGATTTGGTCGCGCATAAACGAATACACACGGGTGAAAAACCGTATAGTTGTGATATTTGTGACCTTAAGTTCGCCAATTCTGGTTCTGTGATTAGACATAAATTCACCCATACAGGCGAGAAACCGCACGCATGTGAGGTCTGCCAACACAAATTTAATCGCAAAAGCGATTTAATTTCACACAAGCGTATACATTCCGGCCAAAAACCGTACGTGTGTGATATATGCAATTCCGATTTTGCACAAAAGAGTTATTTAAGTAAACATAAAAAGTTACACACCGGCGATAGACCTTATGGCTGTGAGATATGCGAACGAAAATTTAATTACAAAAGCGATTTAATTATACATCGGAGGACACACACAGGCGAAAGGCCGTACAGCTGTGATATTTGTGAAAAGAAATTTAATAGAAAAAGAGATGTGGCAACACATAAGCGGACACACACAGGTGAGAGACCATACAGTTGCCATATGTGTAAGCGAAAATATTCCCGTGATAGGTATTTAAAGAAACACATAATCAAATGTAGTGTTAGTTATAATAGCTCTGAGGAAGTGGGAGACAGGCTTGCGAACGCACAAAATGGTAGAGACTCTAAAGAAAATGCGGATGATACACAAATAGAGATTGACGACTCTCAAGAAGAGGGGGAAGATTCCCAAGGTGAGTCTGATGATTTCCGAGAAGAAAGTATAGATAATATAGAAGATCGTAGAAACCCCCAAGAAGATCGTAGGGAGTCTTTAGAAGACCGCGGACACTCCTAA
Protein Sequence: MPRTQDKLLIKRPMIFRGSVMDIKLNHIKIEIEPIDNSNAILEIPESRIEIKKESEIELSNEKMYVFIERNVIKVKKESSVKEDLYMSTSHESSSKGQNKITIKQEIEIEPEFPVNMSNSIYLSVQNDGKIKEDLDLKNAYNLMYCTSVAQNDMNNEQNGDTGSYEDDSKHEDYTQEDFVSDDGFSSIIQDFNSKNLATISENLSEEKPFSCNICSLRFSTRYSVTRHIRTHTGEKPYHCNTCNRCFTSKWSLNNHQRIHIGKKSFVCDICDYKFVQQSCLVKHKKIHTGEKPHGCEVCDRKFSRRCDLVAHKRIHTGEKPYSCDICDLKFANSGSVIRHKFTHTGEKPHACEVCQHKFNRKSDLISHKRIHSGQKPYVCDICNSDFAQKSYLSKHKKLHTGDRPYGCEICERKFNYKSDLIIHRRTHTGERPYSCDICEKKFNRKRDVATHKRTHTGERPYSCHMCKRKYSRDRYLKKHIIKCSVSYNSSEEVGDRLANAQNGRDSKENADDTQIEIDDSQEEGEDSQGESDDFREESIDNIEDRRNPQEDRRESLEDRGHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -