Lphl012740.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995164.1:18390218-18402501[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.2 17 6.7 0.5 1 23 186 209 186 209 0.94 2 19 2.2 1.9e+02 3.4 0.9 2 20 234 252 233 256 0.88 3 19 0.22 18 6.5 5.4 1 23 275 297 275 297 0.97 4 19 0.0014 0.11 13.5 3.1 2 23 302 323 301 323 0.96 5 19 0.0014 0.12 13.5 0.1 1 23 328 351 328 351 0.96 6 19 6.1 5.1e+02 2.0 3.1 2 23 357 379 356 379 0.93 7 19 0.0011 0.093 13.8 2.7 1 23 385 408 385 408 0.97 8 19 8.6e-06 0.00071 20.4 1.7 2 23 414 435 413 435 0.97 9 19 0.00043 0.036 15.1 1.2 1 21 441 461 441 462 0.96 10 19 0.057 4.7 8.4 0.5 2 21 647 666 646 667 0.93 11 19 0.073 6 8.1 0.2 2 23 696 718 695 718 0.93 12 19 0.00076 0.063 14.3 0.8 1 23 740 762 740 762 0.98 13 19 0.00096 0.079 14.0 0.3 1 23 766 789 766 789 0.97 14 19 4.3e-05 0.0035 18.2 0.4 1 23 794 817 794 817 0.92 15 19 0.34 29 5.9 0.3 2 13 824 835 823 846 0.85 16 19 0.0073 0.61 11.2 4.9 1 23 853 876 853 876 0.98 17 19 0.00033 0.028 15.4 1.4 2 23 883 904 882 904 0.97 18 19 5.7e-07 4.7e-05 24.1 1.7 1 23 910 932 910 932 0.99 19 19 0.0089 0.73 10.9 1.0 1 23 938 960 938 961 0.93
Sequence Information
- Coding Sequence
- ATGAATAAAGATATGACTGGGAATATATCTAAGCAAAATATATGTCGATGCTGTTTGTCACCCTGTGGGACATGTGATTTAACAGCTGTTCATATAACAGAACAAGGATCGAAGGAAGTATTTGCAGATTTATTAAAACAATGCTTTGGGATAACTTTATCTCATTTGAATGACACAGGAAGTAGTCGACAAATATGTGAACTATGTATTTTACATCTTAGGAATGCTAACAATTTTCATGAGCAAGTTGTTAAAGCAGAAAAATACTTCAATTGTTATTGGGATACTAAAAACAACATTAAAGAAAAATCGAGCATTGAATATGACACAGATGATGATTCTGACATTCCTATCTCGTTATTTAAAGGTCAAATAAATTGTAATACAAAGGAAAGGCAGCAACTTGAAAATAAAGATGCAAATCCTATTACTGACAATAAAAATAGCAACATAAAGCTAATCAAACAAGTATCGGAACGTAAACGTATAAGTTTAACATGCAGAATTATACTCAAAGATACCACAGCGTGTCCTTTTCGTCATCATAAAAGTTGGTTTCAATGCTTTTATTGCTCAGAAGATTTTATGGCAATAGATCTTTTAAGAAACCATACGCTCCAATCCCATGCTGATATCGACGAAGAATTAAAAAAAATTAAGTATTACCCGCGCTCTCTTCAAATTGATATTACGAATTTGGAATGCCGCCAGTGTCGATTGCATTTGACAGATGTGGATGCACTCAAACGTCACTTCGTGGAGAAACATGACAAGTTCATATACAGTGAATGTATAGCCGATTATAAAATCAATTCTAGTCCATATAGTTGTCATTTATGTAAACAAGAATTTCATGTGTTCAGAACACTGACTACGCACCTGAACGAGCATTATGCTAATTGTATATGCGATGTATGTGGAAAATCTTTTTTGAATTCAAAACGACTAAAGGTTCATAAACGAACACACGAAAACGGGACATACCCATGTAAAGAATGCGGGAAAATTTTAAAAACTAAAACAGCCCAAGCCAATCACATTGAAAGTGCTCATTCGAAACGAATTATTAAATGTCAATTATGCTATAAGCCAATGAAACACTACCATGATAGAATAAAACATATGTCAGAAGTTCATAATATAACACATAAATTTCAATGCTATATATGCGGAAGAGAATATAATATCAAGCATTATTTATCTACACATATACGGCAGACGCATGGAGATAAAAATAAGAAATGTGTCGAATGCGGCATGGCATTTATAACTAATCATGACTTAAAAAAACACATGCTTAAGCATTCTGGGGAGCGGCCTTATAAATGTACAATGTGTGCAAAATCGTATTCTAGAAGCTATAGATTAAAAGAACATTTAAAGCTTAGTATAAATACAAACCATAGTTCCCTCATATGTATAACATGTGTTAAAAAGTTACAAGAAGCCAGCAGCTTTAGACATATGATAATAAGCTCTGAGCAGCAATTCCTAGATGTACTTGATAACAAGGAGACTGTTTTTGTTAATGTGGGTAAAGAAATAGAAACAGATAAAGATGAGAAACACGAAAAAAATACTCTAGTTAAGGTTGAGGTCACGGACGTCACCGAAGATGATTATGTTGATGACATTGATGATGCAATTTCTGTGGATGAGGTGTTTGGCGAAGCAGAGTTATTATCTCGATTCAATTTAGAGTCCATCAAACCTCTGCCGAGACGGAATGATTTATACAAGTCATGTAAAAAGTATGTAAAGCAATTGGATTTATTAAAAGGAAAGTATATTACGGCGAAATCATTAGAAAAACTCGTGGAAACCGAATGTAAAGGAAAAGTATATCTTACAGAGAAAATAGCTCACGTTAACAATATAACAATACTGTTAGAAAATTCTAATTTGGCAGCATTCAAAACGAAACGTCGCTCAGGGTTGCCATGCTTCTACTGTAGGAAAGTGTGTGGTAATTTCGACGAATTGTTGCAACACCAAAATATAAACAATTGCAAGATTAATGTGAGGAGAATATTAACAAGATACAGATCAGAGTGTTTAGTAGTGTATGCATATGTTAAGGACTTGAAGTGTACAATATGCGGACAGAATATGCGAAATATTGTGGAATTGAAAATTCATTTAGTGCGGACACACCAAAAGAACTTTCATTCGGAGTATGGTGACAGAGTTATTCCGTTTTCATTTTCGAAAAATCAATATGAGTGTCAAGTGTGTAAATTTAATTTTGAAACTTTCGGCTCTATCGAACGTCATATGAAGGTGCATTTTAGAAATTTTGTGTGTGACCAATGCGGTGCGGGGTACATCACTAAAAATAGACTGAAAGTACACTTAAGATATTCCCACGTTACCGGCGTGTTTCCGTGCGAGATATGCAATAAAACATTCGCCACGCGATATAAGTACAAAGCCCACGTGGATTTAGTGCATAGAATGGTGAAAAAGAATAAGTGTCCCAAATGTCCAGAGCGTTTTTCTGACTACTTCATTCGGGACAAACACATGGTAGAAGTCCATGGAGACCCGCCCTTGAGGTATAAATGCAACGTGTGCGACACTCTGTTTAAGAGACGGTACGCTTTGTCATGTCATATGAAGAGACGCCATCTAGAGGTTAGGGACATACAATGCTCAGTTTGTCCATACAAATGTTATACAAGCACAGAGCTGAAAGTTCACATGATCAAACACAACGGCGAAAGAACGTACGAGTGTACAGTTTGTAAGAAATCATATGCAAGAAAAAAGACGTTGAAAGAACACATGCGGATTCATAATAATGATAGGAGATATGTGTGCATAGTCTGCGGCCAGGGTTTCGTGCAGAATTGTAGCTTGAAGGGTCATATAAAGGCGCATCATCATAACTATCATGCATTGAGTTGA
- Protein Sequence
- MNKDMTGNISKQNICRCCLSPCGTCDLTAVHITEQGSKEVFADLLKQCFGITLSHLNDTGSSRQICELCILHLRNANNFHEQVVKAEKYFNCYWDTKNNIKEKSSIEYDTDDDSDIPISLFKGQINCNTKERQQLENKDANPITDNKNSNIKLIKQVSERKRISLTCRIILKDTTACPFRHHKSWFQCFYCSEDFMAIDLLRNHTLQSHADIDEELKKIKYYPRSLQIDITNLECRQCRLHLTDVDALKRHFVEKHDKFIYSECIADYKINSSPYSCHLCKQEFHVFRTLTTHLNEHYANCICDVCGKSFLNSKRLKVHKRTHENGTYPCKECGKILKTKTAQANHIESAHSKRIIKCQLCYKPMKHYHDRIKHMSEVHNITHKFQCYICGREYNIKHYLSTHIRQTHGDKNKKCVECGMAFITNHDLKKHMLKHSGERPYKCTMCAKSYSRSYRLKEHLKLSINTNHSSLICITCVKKLQEASSFRHMIISSEQQFLDVLDNKETVFVNVGKEIETDKDEKHEKNTLVKVEVTDVTEDDYVDDIDDAISVDEVFGEAELLSRFNLESIKPLPRRNDLYKSCKKYVKQLDLLKGKYITAKSLEKLVETECKGKVYLTEKIAHVNNITILLENSNLAAFKTKRRSGLPCFYCRKVCGNFDELLQHQNINNCKINVRRILTRYRSECLVVYAYVKDLKCTICGQNMRNIVELKIHLVRTHQKNFHSEYGDRVIPFSFSKNQYECQVCKFNFETFGSIERHMKVHFRNFVCDQCGAGYITKNRLKVHLRYSHVTGVFPCEICNKTFATRYKYKAHVDLVHRMVKKNKCPKCPERFSDYFIRDKHMVEVHGDPPLRYKCNVCDTLFKRRYALSCHMKRRHLEVRDIQCSVCPYKCYTSTELKVHMIKHNGERTYECTVCKKSYARKKTLKEHMRIHNNDRRYVCIVCGQGFVQNCSLKGHIKAHHHNYHALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -