Lphl026059.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9146203-9154544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.3e-07 1e-05 26.2 1.9 3 23 582 602 580 602 0.98
2 10 5.3e-05 0.0044 17.9 4.6 1 23 608 630 608 630 0.99
3 10 0.0052 0.43 11.7 9.6 1 23 636 658 636 658 0.99
4 10 2.3e-06 0.00019 22.2 2.9 1 23 664 686 664 686 0.99
5 10 6.8e-06 0.00056 20.7 4.0 1 23 692 714 692 714 0.98
6 10 1e-05 0.00085 20.2 4.5 1 23 720 742 720 742 0.99
7 10 5.1e-06 0.00042 21.1 2.6 1 23 748 770 748 770 0.98
8 10 8.3e-07 6.8e-05 23.6 5.8 1 23 776 798 776 798 0.99
9 10 5.6e-07 4.6e-05 24.2 4.3 1 23 804 826 804 826 0.99
10 10 0.00024 0.02 15.9 5.3 1 23 832 854 832 854 0.98

Sequence Information

Coding Sequence
ATGTCATATAATGATGTGGAGATCAAACAAGAACAAGTGGATTATCTGGAGATCAAACAAGAACAAGTGGATTATCTGGAGATCAAACAAGAACAAGTGGATTATCTGATGCTGCCTGATGGAGATGTGTTTTCTAACAATATGGTGCTTACGCGAGCCGGCCAGCAACAAAATATGCAGGCCGCCGGAGTTGAACGAGAATCCCCGCTGGTGTTGACTGAACAAGATGAGTGCGCCAGCGCCGGCGCTTCATCACTGCCTACGCCACACGGGCGTGAGTCGCCTGTCTCTATAACGTCGCAGTACGGGCGTGCTCCGCCTGTCTCCGTGACACCGTCGCCGCCATCTTCGCCAATAGTGATGTCTGACGAGCAGTTCAGCTCCTTCACTTCATTCACCGAGTTACTCCATCATGCTCGACTGGTGGAGGAGGTCCTCGAGGAAGAACACCAACCGGTGTCGTCCAAACGGAATGATGTGCTGTCTATTCCACGTGGCCCTAAGGTTCGTGATGAGTCCTTGACTTTAGCACCTCCATTGGTGACAACCACGGACAGTAAAGATGATTGTCGAAGACTTACTTCAAAGAACCCTACTATCACTGAAGCAATTAAGATAGAACCAGTTACCGTGCAACCTGATTTGCGCCCCTCTCTTAGTTGTTATGGATGCGGTGCACCAGGTGTTATCCGGTCAAACTGTGAGACCTGCAAGGAAAGACGCGCGGTGCGGCCCGCAACAGCGTCTCAGTCATCATTAGCGTCAATAAACGCTGTCGATCTGTGTGCGTTTACACCGCGTGTTAGACCGATTTTTAAAATCGAAGTGTTTGGTGTTAAGTGTACCGCGTTATTAGATACAGGTGCTAAGCAATCAGTGGCTAGTGAAAATTTAACTAAGCATTTACGTAATAATGGTCAAGTGTTTAAAAGTGTAGAGACTGAATTAAGATTTGCTGATGGTACTAAGCGTGTACAAATTGTAGAAACAACCATGATTCATGTAATTGTGCGAGGAGTGGTGGTGCCAACCTTGTTTATGGTTTTGCCTGGTGCCACAGAATCTCTATTAGGTATTAATTTTGTACAAGACGCTGGCATGATACTTGACTTTTATAGAAATCTTTATAAGTTACGCGATTCGAATTATTATAGTCTTGAGTATGAAGATGAAAATCATATTACGGTTAGTTCTTCGGGGGGTCTCCTTACATCGAGTAATAAAGTTAATTTACAAAATAGTGATGTTATTTTCAGTGCAGGGGGAGAACCCACACCATTAACAGTGCATAGAAAAGGTACAGGAGATATCGTTCCCATCTCATCACCACCATATCGGGTATCACGTGTTAAAAGGGGGCATTGTTCTAGCCAAGCGACTAAAGGTTTTTCTAGTAAATTCGCTCCACGCCGCGAAGGTCCGTATAGGATTAGTAAAATTATATCTCCAACACCGTATGAAGTCGTTGATAGACGCCGCGGCAAGTATCATGTCAGACTTCTGTCCCCATATGCAGGCCCTACAGAACCCATTGTATATGATAGAGATTTTATTAAAATTGAAATAAGAGAAGAAAATCAAACATATTCTGAACAAAACTTAGAAGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAAGACTGAAGAGATTCAAAGCAAATGTGAAGATCCATTAAAGGACGACGAAAGTAATTTAAAGAAGCATAAGAAAACAAACACAGGGGAGAAACCGTACGGCTGCGAATACTGTGATAAGAAATTTTATGATAGCAGTAATTTAAAGAGACATACAAGAACACACACGGGGGAAAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTAATGATTGCAGTAGATTAATCATTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTTGTTGCAGTAGTTTAAAGACTCATAAGAGAACACACACGGGGGAAAAACCATACAGCTGCGAATACTGTGACAAGAAATTTTCTGCTTCCCAAAATTTAAAGACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGATGTCAGCCATTTAAATTCTCATAAGAGATTACACACGGGGAAGAAACCATACAGCTGCGATCACTGTGGTAATAAATATAATTCTTCAGATAATTTAAAGAAGCATAAGAGAACACACACGGGGGAGAAACCGTACACCTGCGAATACTGTAATAAGAAATTTTCTGATGGCAGTAGTTTAAAGACGCATAAGAGATTACACACTGGGGAGAAACCGTACAGCTGCGAATACTGTCATAAGAAATTTGTTAGTAGTAGTAATTTAAAGACTCATAAGAGAACACACACAGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGATTTCAGTAATTTAAAGACTCATAAGAGAACACACACGGGGGAGAAACCGTACATTTGTGAGGTTTGCGATCGCAAGTTTGCTACCCACACTCACTTGAAAACACACAAAACAACACATTAG
Protein Sequence
MSYNDVEIKQEQVDYLEIKQEQVDYLEIKQEQVDYLMLPDGDVFSNNMVLTRAGQQQNMQAAGVERESPLVLTEQDECASAGASSLPTPHGRESPVSITSQYGRAPPVSVTPSPPSSPIVMSDEQFSSFTSFTELLHHARLVEEVLEEEHQPVSSKRNDVLSIPRGPKVRDESLTLAPPLVTTTDSKDDCRRLTSKNPTITEAIKIEPVTVQPDLRPSLSCYGCGAPGVIRSNCETCKERRAVRPATASQSSLASINAVDLCAFTPRVRPIFKIEVFGVKCTALLDTGAKQSVASENLTKHLRNNGQVFKSVETELRFADGTKRVQIVETTMIHVIVRGVVVPTLFMVLPGATESLLGINFVQDAGMILDFYRNLYKLRDSNYYSLEYEDENHITVSSSGGLLTSSNKVNLQNSDVIFSAGGEPTPLTVHRKGTGDIVPISSPPYRVSRVKRGHCSSQATKGFSSKFAPRREGPYRISKIISPTPYEVVDRRRGKYHVRLLSPYAGPTEPIVYDRDFIKIEIREENQTYSEQNLEEQNVTAKAKSKNKTEEIQSKCEDPLKDDESNLKKHKKTNTGEKPYGCEYCDKKFYDSSNLKRHTRTHTGEKPYSCEYCNKKFNDCSRLIIHKRTHTGEKPYSCEYCNKKFSCCSSLKTHKRTHTGEKPYSCEYCDKKFSASQNLKTHKRTHTGEKPYSCEYCNKKFSDVSHLNSHKRLHTGKKPYSCDHCGNKYNSSDNLKKHKRTHTGEKPYTCEYCNKKFSDGSSLKTHKRLHTGEKPYSCEYCHKKFVSSSNLKTHKRTHTGEKPYSCEYCNKKFSDFSNLKTHKRTHTGEKPYICEVCDRKFATHTHLKTHKTTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-