Lphl025844.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995186.1:77802-85880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 2.2e+02 3.1 0.1 14 23 98 107 96 107 0.87 2 12 4e-05 0.0033 18.3 0.3 1 23 113 135 113 135 0.97 3 12 0.00059 0.049 14.6 4.5 2 23 141 162 140 162 0.97 4 12 0.0041 0.34 12.0 1.5 1 23 168 190 168 190 0.94 5 12 5.6e-05 0.0046 17.9 1.4 2 23 196 217 195 217 0.97 6 12 5.5 4.6e+02 2.1 0.0 14 23 224 233 221 233 0.87 7 12 1.4e-05 0.0011 19.8 2.9 1 23 264 286 264 286 0.99 8 12 1.2e-05 0.00096 20.0 5.2 1 23 289 311 289 311 0.97 9 12 4.1e-06 0.00034 21.4 1.7 1 23 317 339 317 339 0.98 10 12 4.2e-06 0.00035 21.4 6.6 1 23 345 367 345 367 0.97 11 12 6e-07 4.9e-05 24.1 0.5 1 23 377 399 377 399 0.96 12 12 2.8e-07 2.3e-05 25.1 1.1 1 23 405 428 405 428 0.96
Sequence Information
- Coding Sequence
- ATGGCGACCACTTCGGTGTTTCACAATGATGCGACGAGTAAACAGGGTCCCGATGACAGCTGGTTGAGAGACGACATCAGTCATCCAAAATATTTGAAATATTTCATGGAGGATGAATCCACGAGCGATGGACGCCGTAAAGAGTCGATGCACGACAAGACAAACCTTACAGAGTTCAAAGGTGACATAGGTAATCCAAAATATTTGAAATATTTCATGGCAGATGATAGTGACACTAGCTCTTATGACAGTGAGTTGGAGCGAGACAGAAGAATAATCAAAGGTGAGAACGGGTGTCTGAAACTCCATATGAAAACACACACGGGCGACAAACCGTTCCCATGCGATATCTGCAAGAAGAAATTCCCTTCTGAAATTGATTTAAAATTGCATAGAATCAGGCACTACAACGAAAGCACCACTTGCGAAATTTGCGATTCGAAATTTCAAACGAATCAGTGTTTGAAGACACACATGAAAACACACAAACGGGAGAAACCGCACACGTGTGACGTTTGTAAAAAGAAGTTCGCCTCTGATATTCTCTTACGAATACACAAAACGGAACATTTAGCCGACGAGATGACTTGCGATGTTTGTAATCGTGAGTTTTCATCCCTTAGCCGTTTAAAAATACACAAGAAAACCCACACCAAAGAAAGGCCCCCCAGATATTTAGAAATACATCAGAGAATACACAACGAAAAGGCCCAAAATCATGACGAACATGAGACCCATCAATATATTATGAAAAAGAAGCCCGTGGACACGTCTACCGGCGAGAAACCGTTCAAGTGTGACGTTTGTGATCGTATCTTTTCTCAAATCAGTTGTCTCAATTTACACAGAAAGACGCACGTCATCCACAGCTGTGATGATTGCGGTAAGACATTCGCTCACAACTACCGCCTCAACAAACACAAGCTCACTCACGCCGGGTACAGGCCGTACGTGTGCGACATTTGCGACTTGAAGTTCACGTATAAGAGCCATTTAGATGTGCACAAGAGGATACACACGGGCGATAAACCGTTCTGTTGTCACATTTGCGATCGGAAATTCACAAACAACAGCAGCCTCAAACGACACGTGAGCTCTCATTTCGTAGCTCACGACGCGGACAAGCCGTTCATCTGCGACGTATGCGACCAAAACTTCATTCGCAAGAGCGATTTGAAACGCCACATGACCGCGCACACCGGCGAGCGCCAATATGCGTGCGATATGTGCGATCGGAAGTTTTCGCAAAATAGTAATTTAATTAGACATAAAAAAATTACTCATTAA
- Protein Sequence
- MATTSVFHNDATSKQGPDDSWLRDDISHPKYLKYFMEDESTSDGRRKESMHDKTNLTEFKGDIGNPKYLKYFMADDSDTSSYDSELERDRRIIKGENGCLKLHMKTHTGDKPFPCDICKKKFPSEIDLKLHRIRHYNESTTCEICDSKFQTNQCLKTHMKTHKREKPHTCDVCKKKFASDILLRIHKTEHLADEMTCDVCNREFSSLSRLKIHKKTHTKERPPRYLEIHQRIHNEKAQNHDEHETHQYIMKKKPVDTSTGEKPFKCDVCDRIFSQISCLNLHRKTHVIHSCDDCGKTFAHNYRLNKHKLTHAGYRPYVCDICDLKFTYKSHLDVHKRIHTGDKPFCCHICDRKFTNNSSLKRHVSSHFVAHDADKPFICDVCDQNFIRKSDLKRHMTAHTGERQYACDMCDRKFSQNSNLIRHKKITH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -