Lphl005470.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995183.1:244908-247244[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.1e-05 0.0042 18.0 5.3 1 23 6 29 6 29 0.95 2 20 0.0011 0.088 13.8 0.4 2 23 35 57 34 57 0.94 3 20 5.8e-06 0.00048 20.9 0.2 2 23 66 88 66 88 0.97 4 20 0.11 8.8 7.5 4.0 2 23 97 119 96 119 0.96 5 20 0.00012 0.0096 16.9 0.2 2 23 127 149 126 149 0.95 6 20 1.2e-06 0.0001 23.1 1.9 2 23 157 179 156 179 0.96 7 20 1.4e-07 1.1e-05 26.1 1.2 1 23 185 208 185 208 0.98 8 20 0.024 2 9.6 0.1 2 23 256 278 255 278 0.94 9 20 0.0092 0.76 10.9 0.8 1 23 308 331 308 331 0.94 10 20 0.41 34 5.7 1.7 2 21 339 358 338 359 0.92 11 20 0.18 15 6.8 2.2 3 23 369 390 368 390 0.92 12 20 0.014 1.2 10.3 4.0 1 23 413 436 413 436 0.97 13 20 0.00041 0.034 15.1 2.5 3 23 444 465 442 465 0.96 14 20 1.6e-05 0.0013 19.6 2.7 2 23 472 494 471 494 0.92 15 20 0.033 2.8 9.1 1.3 1 23 500 523 500 523 0.91 16 20 0.071 5.9 8.1 4.4 2 23 531 553 531 553 0.95 17 20 0.0064 0.53 11.4 0.1 1 23 560 583 560 583 0.91 18 20 0.0072 0.59 11.2 0.6 1 23 590 613 590 613 0.97 19 20 0.00081 0.067 14.2 2.3 5 23 630 649 627 649 0.91 20 20 1.9 1.6e+02 3.6 0.1 2 17 669 684 668 685 0.88
Sequence Information
- Coding Sequence
- ATGTCTAGTAATGAATATATCTGTGATTATTGCAGTCGCTCATTCTCAAGATATCACAACTTGCAGACACACATAGAAAACTGCCACTTGAACTCAACATGCTCCTGCGATATCTGCTATCAAAGTTTTGGCAGTCCGGCTGGGCTACAGCAGCACCTGAGTAGGGGTCACAACAGATACGGACGCGGACTACCAGAATGTGACATCTGTGGGAGGATATATGCCAGGAAACAAAACCTCTCCACTCATATGCTTACAGCTCACATACTAAGCTATAGACCAGAAATTCGGTGCAATTTATGTTGTAAATTATTTACTACGGATCGAAATTTAAGGAGACACGTAAGCACGTTCCACAATCCAGATTTTGAATATCTTACCTGTGACGTTTGCAAGAAAATTTTCAAAGGGAAACAGTCATTGATAGCACACATTCAAAACGTACACGCGCCGTCAAAAGACCTCATCAAATGCAAGAAATGTGACAAAATTTATACAAATAAAAGGAATCTGAAACGTCACATTGAAATGAGTCACCGGAACAAAGTTGAGTTCAAGTGTCCCGAGTGTCCAAAGTCGTATACGTCGAAGCAAAGTTTGAAACGCCACCTGCAAATGTTACATTTAGAAACTTATCATAACTCCGACCCACGGTACGAACTTGGTCCCACGGTAATCGAGTCTAACGAGCAATCGAACACGCCACCGGTCGGTGAATACGTGCAAGAAAACGAATGCGATGTCAACGATACGAAGGATAATGTTGTGTGCGAAATTTGTAATAGTATTTTCTTTGAAGAAGCGCTGCTACGAAAACATATAAAAGCCAAGCACTCGTTTCAAGATTTTTACAATTATTGCAAAAAAGTTTTACTTTCGAGGTCTGGTGACAAAAGTAAAGATAATAATAAAAACATAAAATATCACTGTGAACTGTGTACAGAATATTTCCCGAGCGTTTCAGAATTGAAATATCATATCGGATCCAGCCACGACAGGGAGTACACATTGTCCACTTGCAATGTTTGTTTCCATCGTTTCTTCACCAAAGAATCTATGCTGGAACACAAAAAAGTATGTCTTCCACCAGCAGACGCTAATGCTTGTAGCCATTGTGATAAATTATTCACAGACGTAAAGAGCTTGGAGTTTCATAAAAAAATATTTCATCCCCAAGCACAAATCGCAGATGCGAATGTCTCGACCACTTTCGTAGAGGAGTCGTCGGACTCTATCTTTAAATGCGCACATTGCGAGAGAGTGTATTATGCTGAGCGTTCCCTCCGACATCACATCAAGTTAAAGCACACCTTGAACAAGGAAGTTCATTGCCAAGTGTGCAGCAGAGTGTGCAGCAACAAGTATTACCTGGCGTCCCACATGAAGATCGTCCACAACAACGACGACTTGTCCCAATGCAAGTATTGCGGCAAGCAGTTTAAAACCAAACGTAATATACGACGGCACATTGAATTCACTCACCTGGGCCGCCAAAGGTACAAGTGTATAGCTTGCGACACGCTGTTTAAAGAAAAACGAAGTCTAAGAAAACATGTGCGGATCAAGCATCCGGACTCCAATCTGTTTCCCCAATGTCACATTTGCGAGAAGCGTTTCGAATCCGCTAAGTCGTGCAAGATCCATCTGAAGCTTCTGCACTCGTTCAATATGAACACGTTCCCGTGTGGCATGTGCACCGTCTCCTTCACGTCTCAGGAGGCTCTGGACATTCACGTATCGGCGAAACATTTGGCAGAGAACGAGATATACAAGTGCGAGGAGTGCAACCTCGTTTTCGAAGGGCAAGCTCGATTCGACCGTCACAAGGAGACGCGCCACAGCAATCCCGACGCTAAGCGTAAGATACTCCAATCTCCGAGGTGTATTTTGTGCGACAAAGATTTCAGTTCGCGTAAAACGTTAAAGAGACACATCAAGAATTTCCACAAGGACTTCGAGGAGGACGAGCTGTCGAATTTATGCCTCAAACGCCACGTCAACGTCGAGTGCCCCGACTGCATCAAGAACTTCACCGACGAGTACTACTTCAACGTGTATCAGAAGCTAAAAAGTATTCCCGATTCGATCGTGTTCAAGTGCGAATTCTGCAAGTCCTCGTACGGATGTTTCGAGTACGCCGTGCTGCGGCAGAAACAAAACTTCGACATAAGCAAGAGCAAACATTATCTGAGCGAGCTGTGCACGGCGGAAATGAGCGACCAGTCGCCGGCGCCGTCCGACCACGAGGGGGAGCCGGTCACCACCACTGCGCGCTTAAAGTCGGAGCCCCCGGGTGACTTGGAATATAACATTAAAATCGAACCCTGGTCTCCTTGA
- Protein Sequence
- MSSNEYICDYCSRSFSRYHNLQTHIENCHLNSTCSCDICYQSFGSPAGLQQHLSRGHNRYGRGLPECDICGRIYARKQNLSTHMLTAHILSYRPEIRCNLCCKLFTTDRNLRRHVSTFHNPDFEYLTCDVCKKIFKGKQSLIAHIQNVHAPSKDLIKCKKCDKIYTNKRNLKRHIEMSHRNKVEFKCPECPKSYTSKQSLKRHLQMLHLETYHNSDPRYELGPTVIESNEQSNTPPVGEYVQENECDVNDTKDNVVCEICNSIFFEEALLRKHIKAKHSFQDFYNYCKKVLLSRSGDKSKDNNKNIKYHCELCTEYFPSVSELKYHIGSSHDREYTLSTCNVCFHRFFTKESMLEHKKVCLPPADANACSHCDKLFTDVKSLEFHKKIFHPQAQIADANVSTTFVEESSDSIFKCAHCERVYYAERSLRHHIKLKHTLNKEVHCQVCSRVCSNKYYLASHMKIVHNNDDLSQCKYCGKQFKTKRNIRRHIEFTHLGRQRYKCIACDTLFKEKRSLRKHVRIKHPDSNLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTFPCGMCTVSFTSQEALDIHVSAKHLAENEIYKCEECNLVFEGQARFDRHKETRHSNPDAKRKILQSPRCILCDKDFSSRKTLKRHIKNFHKDFEEDELSNLCLKRHVNVECPDCIKNFTDEYYFNVYQKLKSIPDSIVFKCEFCKSSYGCFEYAVLRQKQNFDISKSKHYLSELCTAEMSDQSPAPSDHEGEPVTTTARLKSEPPGDLEYNIKIEPWSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787010;
- 90% Identity
- iTF_00787010;
- 80% Identity
- -