Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995167.1:16750883-16755664[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8e-07 4e-05 24.4 0.4 1 23 179 201 179 201 0.98

2 14 0.0024 0.2 12.7 0.8 1 23 207 230 207 230 0.98

3 14 1.2e-05 0.001 19.9 0.4 1 23 236 258 236 258 0.98

4 14 4.2e-05 0.0035 18.2 3.0 1 23 264 286 264 286 0.99

5 14 3.4e-06 0.00029 21.7 2.0 1 23 292 314 292 314 0.98

6 14 6.7e-07 5.6e-05 23.9 1.1 1 23 320 343 320 343 0.95

7 14 1.5e-05 0.0012 19.7 3.8 1 23 349 371 349 371 0.97

8 14 1e-05 0.00084 20.2 0.9 1 23 377 399 377 399 0.99

9 14 0.00017 0.014 16.3 1.0 1 23 405 427 405 427 0.99

10 14 2.4e-08 2e-06 28.4 0.7 1 23 433 455 433 455 0.98

11 14 5.5e-06 0.00046 21.0 3.6 1 23 461 483 461 483 0.98

12 14 0.13 10 7.3 2.9 1 23 489 508 489 508 0.94

13 14 1.5e-06 0.00013 22.8 0.8 1 23 514 536 514 536 0.98

14 14 0.00013 0.01 16.8 6.6 1 23 542 564 542 564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8e-07	4e-05	24.4	0.4	1	23	179	201	179	201	0.98
2	14	0.0024	0.2	12.7	0.8	1	23	207	230	207	230	0.98
3	14	1.2e-05	0.001	19.9	0.4	1	23	236	258	236	258	0.98
4	14	4.2e-05	0.0035	18.2	3.0	1	23	264	286	264	286	0.99
5	14	3.4e-06	0.00029	21.7	2.0	1	23	292	314	292	314	0.98
6	14	6.7e-07	5.6e-05	23.9	1.1	1	23	320	343	320	343	0.95
7	14	1.5e-05	0.0012	19.7	3.8	1	23	349	371	349	371	0.97
8	14	1e-05	0.00084	20.2	0.9	1	23	377	399	377	399	0.99
9	14	0.00017	0.014	16.3	1.0	1	23	405	427	405	427	0.99
10	14	2.4e-08	2e-06	28.4	0.7	1	23	433	455	433	455	0.98
11	14	5.5e-06	0.00046	21.0	3.6	1	23	461	483	461	483	0.98
12	14	0.13	10	7.3	2.9	1	23	489	508	489	508	0.94
13	14	1.5e-06	0.00013	22.8	0.8	1	23	514	536	514	536	0.98
14	14	0.00013	0.01	16.8	6.6	1	23	542	564	542	564	0.98

Sequence Information

Coding Sequence: ATGCATGGAATATGTCGTTGTTGTCATACACAAGGAAATTTTAGAAGCCTAGATGAACCATTTGATTACGAGGGACGTCAAGAAATATACTCTACTATGTTATCTGAAACTTTTAATATTACTCTAAAACCAGTGCTACATACAGTACCGAGAGTTTATTCAATATGTGAAGTGTGCATACCAAGGCTGAGGGATGCAGCAACGTTCAGACATCAAGTAATTAACTGTGAAAAGTTGTTTGATAACTTCTATAATCATCATTTTATAAAAGGTGAAGATTCATTAGACCAGCCTGTGAAGGAGGAAGCAATAGAAATTTTTGATGGATTGAAGAAAGAATTAATTAATGAAGTAGAAAATATTAAAGAACAGAAGTATGTTGATGAAGACAAGTCATTACGTCTAGAGCATTTAGCTGATGATGTTGATGACCAACCACTATCAACTCTCAAATATTCTGAACCAGATGACGACTGGATTGCACCAATTAGTGATGAAGAAGATACAAAACCAGTGAAACAAAAAATAAAAAAATATGTTTGTGATATATGCCAAAGAAAATTCTCTTACCAAGGCTCTCTCGAAGTTCACATGCAAATGCACAAAGGCGTGAAAAACTATCAGTGCCTCCTCTGTGATAGCAAATATACATTAAATAAGGAATTATTGTCACACATTCGATCTCAACATTCTGATGGAGCTAAATTCCCTTGTACGATATGTTCAAAAATATTCGATAAGCCGAGACTTTTAAAAAATCATCTAAAAATACACTTCGGGGAACCTAAATTCAAATGTTCACAATGCGTTAAAGAATTTCGAAAGAAAAAGGGTTTGAAAGAACATCTTAAAACGCACACAAAAGAAAAGAAATACGCTTGCACAATTTGCAATAAATCGTTTGGGCACAATCAAACTCTAAAGTCCCATATTTTAACGCACACAGGCGAAAGACCGTATATCTGCGACATTTGCGGGAGAAGATTCCCGCAACGCACACATCTAAAGAGACACATATTCATTATACACACGGGCATCAAACCCCACACATGCAAAGTTTGTAACAAACAGTTCTCAAGTAAAAGCTACTTGATGATTCACGAAAGACAACACACTGGGGAGCGACCGTATACATGCGAAGTGTGTAAGAAGGATTTCACAGCGTACACCACTCTGAAGGTCCACATGAGAATACACACGGGACTAAAACCGTATGTATGCTCATTTTGCGACCGCCAATTCGCGCAAATGGCTAGTTTTAAGCTTCACGAACGCACACACACAGGAGAGCGGCCGTATAGTTGTGAAATTTGCAAGAAATCGTTCTCGGATAACGGGTATTTGAAAATTCATATGCGGGTACATTCCGGCGAGAAACCTTTTTGTTGCGATGTCTGCAAGCGTTCGTTCCGGGAGACTGGGCAGTTGAAACGCCACATGAGAGTCCACACCGGCGTCAAACCTTATACGTGTAAGATCTGCAATAAACAGATCGGTAATTTGAGCAAACACATGAAAGTGCATACCGAAGATCGGCCATTTAATTGCAATGTTTGCAATAAACAATTCTCTATCAACGGTAACCTGAAACTACATATGCGGATACATACAGGTGAAAGACCGTTCAGTTGTGAGGTCTGTAATTGTCAATTTACTCAAAGCAGTGGGCTAAAACGACATAGGTGCACTCATGGCAAAAATGATACTTGA
Protein Sequence: MHGICRCCHTQGNFRSLDEPFDYEGRQEIYSTMLSETFNITLKPVLHTVPRVYSICEVCIPRLRDAATFRHQVINCEKLFDNFYNHHFIKGEDSLDQPVKEEAIEIFDGLKKELINEVENIKEQKYVDEDKSLRLEHLADDVDDQPLSTLKYSEPDDDWIAPISDEEDTKPVKQKIKKYVCDICQRKFSYQGSLEVHMQMHKGVKNYQCLLCDSKYTLNKELLSHIRSQHSDGAKFPCTICSKIFDKPRLLKNHLKIHFGEPKFKCSQCVKEFRKKKGLKEHLKTHTKEKKYACTICNKSFGHNQTLKSHILTHTGERPYICDICGRRFPQRTHLKRHIFIIHTGIKPHTCKVCNKQFSSKSYLMIHERQHTGERPYTCEVCKKDFTAYTTLKVHMRIHTGLKPYVCSFCDRQFAQMASFKLHERTHTGERPYSCEICKKSFSDNGYLKIHMRVHSGEKPFCCDVCKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMKVHTEDRPFNCNVCNKQFSINGNLKLHMRIHTGERPFSCEVCNCQFTQSSGLKRHRCTHGKNDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00262037;
90% Identity: -
80% Identity: -