Lphl026237.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9719932-9728543[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.5e-05 0.0045 17.9 1.2 1 23 169 191 169 191 0.95
2 15 2.1e-06 0.00017 22.3 3.5 1 23 197 219 197 219 0.99
3 15 3.3e-06 0.00027 21.7 4.3 1 23 225 247 225 247 0.99
4 15 8.4e-06 0.00069 20.5 6.8 1 23 253 275 253 275 0.99
5 15 0.007 0.58 11.3 0.2 1 23 280 302 280 302 0.97
6 15 0.00029 0.024 15.6 4.4 1 23 308 330 308 330 0.99
7 15 2.1e-06 0.00017 22.4 2.6 1 23 336 358 336 358 0.98
8 15 4.5e-07 3.8e-05 24.4 2.5 1 23 364 386 364 386 0.99
9 15 1.3e-05 0.0011 19.9 6.6 1 23 392 414 392 414 0.98
10 15 0.00076 0.063 14.3 6.7 1 23 420 442 420 442 0.98
11 15 3.1e-06 0.00026 21.8 2.9 1 23 448 470 448 470 0.98
12 15 0.0062 0.51 11.4 6.6 1 23 476 498 476 498 0.98
13 15 9.3e-07 7.7e-05 23.5 3.2 1 23 504 526 504 526 0.98
14 15 5e-06 0.00042 21.2 5.1 1 23 532 554 532 554 0.99
15 15 1.3e-06 0.0001 23.0 3.3 1 23 560 582 560 582 0.98

Sequence Information

Coding Sequence
ATGTCATATAATGATGTGGAGATCAAACAAGAACAAGTGGATTATCTGGAGATCAAACAAGAACAAGTGAATGATCTGGAGATCAAACAAGAACAAGTAAAGGATCTGGAGATTAAACAAGAACAAGTGGATGATCTGGAAATCAAACAAGAACAAGTGAATGATCTGGAAATCAAACAAGAACAAGTGAATGATCTGGAAATCAAACAAGAACAAGTGAATGATCTGGAGATTAAACAAGAACAAGTGAATTGTCTGGTGCTGCCTGATCGAGATGATTTTATAAAAATGGAAGTAAGTGAAGAAAATCAACCATATTCTGAACACAATGTTACTGCCAAAGCAAAAAGTATAAACACGACTGAAGTGATTCAAAGCAAATGTGAAGATTCATTAAAAGATGACGAAGATAATTTAGAACGGTCGAAAATTGAAAAGGACAACAATCAACGAGTCGACCTAAATAAGGATTCAGGTAAAGATGTACAAGCGAGCAAGTTAAAGTTCGCGTGCAACGTCTGCAACCGGAAGTTTGCACGGAAGTATACCTTGAAGCTACACAAGGTGGTCCACTCTGGGGACAAGCCATACGAGTGTGACATCTGCAAGCGCAAGTTCTCCACCAGAAGCCATATTGTCAATCACATGAAAACACACACCGGAGAGAAACCATACAGCTGCAAATACTGTAATAAGAAATTTTATAATCGCAATGACTTAGAGAGACATAATAGAACACACACGGGGGAGAAACCGTACAGCTGTGAATACTGTAATAAGAAATTTTGTCAAACCGGTAATTTAAAGAAGCATAAGAAAACACACACGAGGGAGGTCTATGCCTGTGATGTATGCGATAAGAAGTTTTTAATGAAACAGGGTTTAGAAGTGCATAAAATAACACATACAGGAGAGAGGCCGTACAGCTGTGACATTTGCAATCGCAAATTTCTTTATAGAGGGCAACTCACGAAACATCACAGAACACATACCGGTGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCAGATTATTTAAAGAGACATAAGAGAATACACACGGGGGAGACACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCCGATGGTAGTAATTTAAACACTCATAAAAGAACACACACGGGGGAGAAACTGTACTGCTGCGAATACTGTAATAAGAATTTTTCTACTTTAGATTATTTGAAGAAGCATAAGAGAAGACACACGGGGGAGAAACCGTACTGCTGCGAATACTGTAATAATAAATTTTATGATCGCAATCTTTTAAAGAAGCATAAGAGAACACACACGGGGGAAAAACCGTTCAGCTGCGAATACTGTAATAAGAAATTTTCTGATGGTAGTTATTTAAATACTCATAAGAGAACACACACGGGGGAGAAACCGTATTGCTGCGAATACTGTAATAAGGAATTTTATAATCGCAATGTTTTTAGGAAGCATAATAAAACACACACGGGGGAGAAACAGTTTAGCTGCGAATACTGTGATAAGAAATTTTATGATCGCTATGATTTAAATAGACATAACAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGACATTTTCTATTTGCAGTAATTTAAATTCTCATAAGAGAACACACACGGGGGAAAAACCATATATTTGTGAAGTTTGCGATCGCAAGTTTGCTACCAACTCTCACTTGAAAACACACAAAAAAACACACTAG
Protein Sequence
MSYNDVEIKQEQVDYLEIKQEQVNDLEIKQEQVKDLEIKQEQVDDLEIKQEQVNDLEIKQEQVNDLEIKQEQVNDLEIKQEQVNCLVLPDRDDFIKMEVSEENQPYSEHNVTAKAKSINTTEVIQSKCEDSLKDDEDNLERSKIEKDNNQRVDLNKDSGKDVQASKLKFACNVCNRKFARKYTLKLHKVVHSGDKPYECDICKRKFSTRSHIVNHMKTHTGEKPYSCKYCNKKFYNRNDLERHNRTHTGEKPYSCEYCNKKFCQTGNLKKHKKTHTREVYACDVCDKKFLMKQGLEVHKITHTGERPYSCDICNRKFLYRGQLTKHHRTHTGEKPYSCEYCNKKFSASDYLKRHKRIHTGETPYSCEYCNKKFSDGSNLNTHKRTHTGEKLYCCEYCNKNFSTLDYLKKHKRRHTGEKPYCCEYCNNKFYDRNLLKKHKRTHTGEKPFSCEYCNKKFSDGSYLNTHKRTHTGEKPYCCEYCNKEFYNRNVFRKHNKTHTGEKQFSCEYCDKKFYDRYDLNRHNRTHTGEKPYSCEYCNKTFSICSNLNSHKRTHTGEKPYICEVCDRKFATNSHLKTHKKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-