Lphl026114.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9241118-9247067[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.7e-08 6.4e-06 26.9 2.8 1 23 131 153 131 153 0.98
2 15 5.7e-05 0.0047 17.8 8.3 1 23 159 181 159 181 0.98
3 15 1.7e-05 0.0014 19.5 8.5 1 23 187 209 187 209 0.99
4 15 1.3e-05 0.0011 19.8 10.3 1 23 215 237 215 237 0.98
5 15 2.5e-06 0.0002 22.1 7.6 1 23 243 265 243 265 0.98
6 15 0.00028 0.023 15.6 6.2 1 23 271 293 271 293 0.99
7 15 8.4e-06 0.0007 20.4 4.4 1 23 299 321 299 321 0.99
8 15 2e-06 0.00017 22.4 6.7 1 23 327 349 327 349 0.99
9 15 5.5e-05 0.0046 17.9 4.9 1 23 355 377 355 377 0.99
10 15 2.9e-05 0.0024 18.7 5.2 1 23 383 405 383 405 0.99
11 15 8.3e-06 0.00069 20.5 4.9 1 23 411 433 411 433 0.98
12 15 4e-05 0.0033 18.3 6.0 1 23 439 461 439 461 0.99
13 15 2.9e-05 0.0024 18.8 9.4 1 23 467 489 467 489 0.98
14 15 7.6e-07 6.3e-05 23.7 4.4 1 23 495 517 495 517 0.97
15 15 0.00044 0.036 15.0 10.5 1 23 523 545 523 545 0.97

Sequence Information

Coding Sequence
ATGGTAAAAAAACAAGCGAAAGAGTGTGCGAGAAATGTGTTGCGAGAGATGAGCCATGACGAGAGCGCCGAGCGGTTCGCAGGCAAGTCCTTCCGTTCCCTCTACAACGCACCCCCCGCCTCGACATATTACACAGCATCCTCGCACGGCTCGCACCGCACATTAATGCGCATTTTCACAGCTCCGCTACACATCCGCGTACGACACATTTCCCTCGCACATCTCTGGTGGAAACGCAGCCTTAACCCCGTTGAATATGTTTATGAATGTCACCGCCATGACAGGTACATTTTAGAGATGCCAGAGTCACTCATTTTTGCCAAATATCTATTAAAGGACGACGAAGGAAATTTAAAGAAGCATAAGAGAACAAACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGACATTTTATTATCCCAGTGAATTAAAGAGACATACGAGAAAACACACGGGGGAAAAACCGTACTGCTGCGAATACTGTGATAAGAAATTTTCTGATTGCAGTCGTTTAAAATCTCATACGAGAACACACACAGGGGAGAAACCGTACAGCTGCGAATACTGCAATAAGAATTTTTCTCATTGCAGTAGTTTAAAATCTCATAAGAGAACACACACGGGGGAGAAACCGTACTGCTGCGAATACTGTGATAAGAAATTTTCTGATTGCAGTCATTTAAAATCTCATACGAGAACACACACAGGGGAGAAACCGTATAGCTGCAAATACTGTAATAAGAAATTTCCTGACTGTAGTCATTTAAAGAGACATACGAGAGTACACACAGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTATATTTGCAGTACATTAAACACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTATGATCGCAGTAGATTAAACACTCATAAGAGAACACACACGGGGGAGAAACGGTACAGCTGCGAATACTGTAATAAGAAATTTAATACTTGCAGTAACTTAAACACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTTATTGCGGTGGTTTAAGCACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATCTTGTAATAAGAAATTTTCTAATTGCAGTACTTTAATATCTCATAAGAGAACACACACGGGGGAGAAACCGTACAACTGCGAATACTGTAATAAGAAATTTTATGATTGTAGTAGTTTAAAATCTCATATAAGTACACACACGGGGGAGAAACGGTACAGCTGCGAATACTGTAATAAGAAATTTTATAATTGCAGTAGATTAAACGCTCATAAGAGAACACACACGGGGGAGAAACCGTACTGCTGCGAATACTGTAATAAGAAATTTTCTAATTGCAGTAGTTTAAAATCTCATAAGAGAACACACACGGGGGAGAAACCGTTCAGCTGCGAATACTGTGATAAGAAATTTACTCACAGCAGCAATTTAAAGTCTCATACGAGTATACACACGGGGGAGAAACCGCACTGCTGCGAATACTGTAATAAGACATTTTATTATTCCATTCATTTAAAGAGACATACGAAAACACACACGGGGGAGAAACCGTAG
Protein Sequence
MVKKQAKECARNVLREMSHDESAERFAGKSFRSLYNAPPASTYYTASSHGSHRTLMRIFTAPLHIRVRHISLAHLWWKRSLNPVEYVYECHRHDRYILEMPESLIFAKYLLKDDEGNLKKHKRTNTGEKPYSCEYCDKTFYYPSELKRHTRKHTGEKPYCCEYCDKKFSDCSRLKSHTRTHTGEKPYSCEYCNKNFSHCSSLKSHKRTHTGEKPYCCEYCDKKFSDCSHLKSHTRTHTGEKPYSCKYCNKKFPDCSHLKRHTRVHTGEKPYSCEYCNKKFYICSTLNTHKRTHTGEKPYSCEYCNKKFYDRSRLNTHKRTHTGEKRYSCEYCNKKFNTCSNLNTHKRTHTGEKPYSCEYCNKKFSYCGGLSTHKRTHTGEKPYSCESCNKKFSNCSTLISHKRTHTGEKPYNCEYCNKKFYDCSSLKSHISTHTGEKRYSCEYCNKKFYNCSRLNAHKRTHTGEKPYCCEYCNKKFSNCSSLKSHKRTHTGEKPFSCEYCDKKFTHSSNLKSHTSIHTGEKPHCCEYCNKTFYYSIHLKRHTKTHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00925942;
90% Identity
iTF_00925942;
80% Identity
-