Lphl025739.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9670142-9678549[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.8e-06 0.00048 21.0 6.8 1 23 87 109 87 109 0.99
2 15 3.4e-06 0.00028 21.7 6.0 1 23 115 137 115 137 0.99
3 15 2.8e-05 0.0023 18.8 6.0 1 23 143 165 143 165 0.99
4 15 3.4e-06 0.00028 21.7 6.0 1 23 171 193 171 193 0.99
5 15 0.00045 0.037 15.0 3.9 1 23 199 221 199 221 0.98
6 15 0.00045 0.037 15.0 3.9 1 23 227 249 227 249 0.98
7 15 1.7e-05 0.0014 19.5 6.0 1 23 255 277 255 277 0.99
8 15 6e-05 0.005 17.8 2.6 1 23 283 304 283 304 0.99
9 15 2.2e-06 0.00019 22.3 4.7 1 23 310 332 310 332 0.98
10 15 1.3e-05 0.0011 19.8 3.2 1 23 338 360 338 360 0.97
11 15 2.3e-06 0.00019 22.2 5.4 1 23 366 388 366 388 0.98
12 15 0.00059 0.049 14.6 8.0 1 23 394 416 394 416 0.97
13 15 2.8e-07 2.3e-05 25.1 2.4 1 23 422 444 422 444 0.99
14 15 2.8e-07 2.3e-05 25.1 2.4 1 23 450 472 450 472 0.99
15 15 1.8e-05 0.0015 19.4 4.9 1 23 478 500 478 500 0.99

Sequence Information

Coding Sequence
ATGTCATATAATGATGTGGAGATCAAACAAGAACAAGTGGATTATCTGGTGCTGCCTGATGGAGATGATTTTATAAAAATTGAAATAAGAGAAGAAAATCAACCATATTCTGAACAAAACTTGGACGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAACACTGAAGGGATTGAAAGCAAATGTGAAGATCCATTGAAAGACGACGAAGATAATTTAAAGAAGAATAAGAGAACAAACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTTATTGCAGTAGTTTAACGAATCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATATTCTCATAATAGTCAATTAAAGTTACATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATATGAAATTTTCTTATTGCAGTAGTTTAACGAATCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATATTCTCATAATAGTCAATTAAAGTTACATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATATGAAATTTTATGATCTATGTGCTTTAAAGAAGCATAAGATAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATATGAAATTTTATGATCTATGTGCTTTAAAGAAGCATAAGATAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGACATTTTTTTATTGCGGTAGTTTAACGAAACACAAGAGAACACACACGGGGGAGAAACCGTACAGATGTGAATACTGTAAGAAATTTTTTGCTTCAGGAAATTTAAAGAGGCACGAAAGAACACACACGAGTGAGAAATCATACAGCTGCGAATACTGTAATAAGAAATTTTCTACTTTAGATTATTTGAAGAAGCATAAGAAAAGACACACGGGGGAGAAACCGCACAGCTGCGAATACTGTAACATGAAATTTTCTGATGGTAGTCAATTAAAGAAACATACGAGAATACACACGGGGGAGAAACCGCACAGCTGTGAATACTGTAATAAGAAATTTTACGATCGCAGTGATTTAAAGACTCATACAAGAACACACACGGGGGAGAAACCGTACAGTTGCGAATGCTGTGATAAGAAATTTTCTAATTGCAGTAGTTTAACGAATCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTTTCTGATGGCAGTAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTTTCTGATGGCAGTAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTGTGTATCCGGTACCTTAAACACTCATAAGAGAACACACAAGAAATGTTCTGATCCCTGTTTTAAAGAAGCACAAGAGAACACATAG
Protein Sequence
MSYNDVEIKQEQVDYLVLPDGDDFIKIEIREENQPYSEQNLDEQNVTAKAKSKNNTEGIESKCEDPLKDDEDNLKKNKRTNTGEKPYSCEYCNKKFSYCSSLTNHKRTHTGEKPYSCEYCNKKYSHNSQLKLHKRTHTGEKPYSCEYCNMKFSYCSSLTNHKRTHTGEKPYSCEYCNKKYSHNSQLKLHKRTHTGEKPYSCEYCNMKFYDLCALKKHKITHTGEKPYSCEYCNMKFYDLCALKKHKITHTGEKPYSCEYCDKTFFYCGSLTKHKRTHTGEKPYRCEYCKKFFASGNLKRHERTHTSEKSYSCEYCNKKFSTLDYLKKHKKRHTGEKPHSCEYCNMKFSDGSQLKKHTRIHTGEKPHSCEYCNKKFYDRSDLKTHTRTHTGEKPYSCECCDKKFSNCSSLTNHKRTHTGEKPYSCEYCDKKFSDGSSLTKHKRTHTGEKPYSCEYCDKKFSDGSSLTKHKRTHTGEKPYSCEYCNKKFCVSGTLNTHKRTHKKCSDPCFKEAQENT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-