Lphl025824.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9619393-9637173[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.43 35 5.6 0.2 13 23 113 123 111 123 0.90
2 17 1.4e-07 1.1e-05 26.1 3.0 1 23 129 151 129 151 0.99
3 17 9.2e-08 7.6e-06 26.6 3.6 1 23 157 179 157 179 0.99
4 17 7.5e-07 6.2e-05 23.8 3.8 1 23 185 207 185 207 0.99
5 17 9.5e-07 7.9e-05 23.4 5.9 1 23 213 235 213 235 0.99
6 17 9.4e-07 7.8e-05 23.4 2.7 1 23 241 263 241 263 0.99
7 17 4.1e-07 3.4e-05 24.6 3.6 1 23 269 291 269 291 0.99
8 17 9.2e-06 0.00076 20.3 3.1 1 23 297 319 297 319 0.98
9 17 1.4e-07 1.1e-05 26.1 3.0 1 23 325 347 325 347 0.99
10 17 0.57 48 5.2 3.5 1 13 353 365 353 369 0.88
11 17 8.6e-08 7.1e-06 26.7 1.8 1 23 430 452 430 452 0.99
12 17 9.5e-07 7.9e-05 23.4 5.9 1 23 458 480 458 480 0.99
13 17 5.3e-06 0.00044 21.1 2.7 1 23 486 508 486 508 0.97
14 17 4e-06 0.00033 21.5 2.2 1 23 514 536 514 536 0.98
15 17 1.4e-07 1.1e-05 26.1 3.0 1 23 542 564 542 564 0.99
16 17 4.5e-06 0.00037 21.3 6.6 1 23 570 592 570 592 0.99
17 17 5.6e-05 0.0046 17.9 3.3 1 23 598 620 598 620 0.98

Sequence Information

Coding Sequence
ATGTCATATAATGAGGTGGAGATCAAACAGGAACAAGTGGATTATCTGGTGCTGCCTGATGGAGATGATTTTATAAAAATTGAAATAAGAGAAGAAAATCAACCATATTCTGAACAAAACTTAGAAGAACAAAATATTACTGCCAAAGCAAAAAGTCAAAACAAGACTGAAGGGATTCAAAGCAAATGTGAAGATAAAAAAAAAATTGAAATAAGAGAAGAAAATCAACCATATTCTGAACAAAACTTGGGCGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAACACTGAAGGGATTGAAAGCAAATGTGAAGATTCATTGAAAGACGACGAAGATAATTTAAAGAAGCATAAGAGAACACACACGGGTGAAAAACCATACAGCTGCGAATACTGTGATAAGAAATTTAATAATCGCAGTGATTTAAACAGACACAATAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTTTCTGATTACAGTAATTTAAAGACTCATAAGAGGACACACACGGGTGAAAAACCATACAGCTGCGAATACTGTGATAAGAAATTTAATAATCGCAGTGATTTTAACAGACACAATAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTTTCTAATTGCAGTAGTTTAACGAATCACAAGAGAACACACACGGAGGAGAAACCGTACAGCTGTGAATACTGTGATAAGAAATTTTCTATTTTAAGTAATTTAAAGACTCATAAGAGAACACATACAGGGGAGAAACCATACAGCTGCGAATACTGTAATAAGAAATTTAATAATCGCAGTGATTTAAACAAACACAATAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTATCTACTTCAGATTATTTAAAGACTCATAAGAGGAGACACACGGGTGAAAAACCATACAGCTGCGAATACTGTGATAAGAAATTTAATAATCGCAGTGATTTAAACAGACACAATAGAACACACTCGGGGGAGAAACCGTACAGCTGCGAATTCTGTAATAAGAAATTCTCCGATTGCAATTTACAAAAAATTGAAATAAGAGAAGAAAATCAACCATATTCTGAACAAAACTTAGAAGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAAGACTGAAGGGATTGAAAGCAGATGTGAAGATCCATTGAAAGACGACGAAGATAATTTAAAGAAGCTTAACAGAACAAACACGGGGGAAAAACCGTACAGCTGTGAATACTGTAATAAGATATTTTCTGATGGCAGTAATTTAAAGAGACATACGAGGACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGAAATTTTCTAATTGCAGTAGTTTAACGAATCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGTGAATACTGTGATAAGAAATTTTCCCAATACGTTACTTTAAAGAGACATAAGGTAACACACACGGGGAAGAAACCGTACATCTGCGAATACTGTGATAAGAAATTATCTACTTCAGATTATTTAAAGACTCATAAGAGGACACACACGGGTGAAAAACCATACAGCTGCGAATACTGTGATAAGAAATTTAATAATCGCAGTGATTTAAACAGACACAATAGAACACACTCGGGGGAGAAACCGTACAGCTGCGAATTCTGTAATAAAAAATTCTCCGATTGCAGTAATTTAAAGACTCATAAAAGAACCCACACAGGGGAGAAACCATACATTTGTGAGGTTTGCGATCGCAAGTTTGCTACCCACGCTCACTTGAAAATACACAAAACAACACACTAG
Protein Sequence
MSYNEVEIKQEQVDYLVLPDGDDFIKIEIREENQPYSEQNLEEQNITAKAKSQNKTEGIQSKCEDKKKIEIREENQPYSEQNLGEQNVTAKAKSKNNTEGIESKCEDSLKDDEDNLKKHKRTHTGEKPYSCEYCDKKFNNRSDLNRHNRTHTGEKPYSCEYCDKKFSDYSNLKTHKRTHTGEKPYSCEYCDKKFNNRSDFNRHNRTHTGEKPYSCEYCDKKFSNCSSLTNHKRTHTEEKPYSCEYCDKKFSILSNLKTHKRTHTGEKPYSCEYCNKKFNNRSDLNKHNRTHTGEKPYSCEYCDKKLSTSDYLKTHKRRHTGEKPYSCEYCDKKFNNRSDLNRHNRTHSGEKPYSCEFCNKKFSDCNLQKIEIREENQPYSEQNLEEQNVTAKAKSKNKTEGIESRCEDPLKDDEDNLKKLNRTNTGEKPYSCEYCNKIFSDGSNLKRHTRTHTGEKPYSCEYCDKKFSNCSSLTNHKRTHTGEKPYSCEYCDKKFSQYVTLKRHKVTHTGKKPYICEYCDKKLSTSDYLKTHKRTHTGEKPYSCEYCDKKFNNRSDLNRHNRTHSGEKPYSCEFCNKKFSDCSNLKTHKRTHTGEKPYICEVCDRKFATHAHLKIHKTTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-