Lphl026047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9303310-9310852[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 7.9 6.5e+02 1.7 0.1 12 22 70 80 69 80 0.85
2 20 6.9e-06 0.00057 20.7 5.1 1 23 87 109 87 109 0.99
3 20 3.1e-05 0.0025 18.7 8.7 1 23 115 137 115 137 0.97
4 20 1.3e-07 1.1e-05 26.1 2.7 1 23 143 165 143 165 0.99
5 20 1.3e-06 0.00011 22.9 6.9 1 23 171 193 171 193 0.99
6 20 1.8e-06 0.00015 22.6 3.3 1 23 199 221 199 221 0.98
7 20 6.6e-05 0.0055 17.6 9.3 1 23 227 249 227 249 0.99
8 20 6.4e-06 0.00053 20.8 8.2 1 23 255 277 255 277 0.99
9 20 4.5e-06 0.00037 21.3 6.8 1 23 283 305 283 305 0.99
10 20 4e-05 0.0033 18.3 7.4 1 23 311 333 311 333 0.98
11 20 5.9e-05 0.0049 17.8 5.8 1 23 339 361 339 361 0.98
12 20 1.5e-05 0.0013 19.6 2.6 1 23 367 389 367 389 0.99
13 20 2.1e-06 0.00017 22.4 4.8 1 23 395 417 395 417 0.99
14 20 3e-05 0.0024 18.7 5.9 1 23 423 445 423 445 0.99
15 20 2.5e-06 0.0002 22.1 4.8 1 23 451 473 451 473 0.99
16 20 5.7e-06 0.00048 21.0 4.5 1 23 479 501 479 501 0.99
17 20 9.2e-07 7.6e-05 23.5 2.4 1 23 507 529 507 529 0.99
18 20 5.8e-07 4.8e-05 24.1 4.5 1 23 535 557 535 557 0.99
19 20 1.3e-05 0.0011 19.8 4.7 1 23 563 585 563 585 0.97
20 20 3e-06 0.00025 21.8 5.9 1 23 591 614 591 614 0.98

Sequence Information

Coding Sequence
ATGTCATATAATGATGTGGAGATCAAACAAGAACAAGTGGATTATCTGGTGCTGCCTGATGGAGATGAATTTATAAAAATTGAAATAAGAGAAGAAAATCAACCATATTCTGAACAAAACTTGGGCGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAAGACTGAAGAGATTCAAAGCAAATGTGAAGATCCATTAAAGAACGACGAAGATAATTTAAAGAAGCATAAGAGAACAAACACAGGGGAGAAACCTTACAGCTGCGAATACTGTAATAAAAAATATTCTGCTTCAGATCATTTAAAGAGGCACAAGAGAACACACACGGGGGAGCAACCGCACTGCTGCGAATACTGTAATAAGAAATTTTCTGATTTCAGTAATTTAAAGACTCATAAGAGAACACATACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTGCTCAATACAGTAATTTAAAGGCTCATAAGAGAACACACACTGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTAGTTGCAGTAATTTAAAGACTCATAAGAGAACACACACAGGGGAGAAACCGTTCAGCTGCGAATACTGTAATAAGAAATTTTATGATTCCAGTACTTTAAAGAGACACAATAGAATACACACGGGAGAGAAACCGTACAGCTGCGAATACTGTAACAAGAAATTTTTTGATTGTAGTCATTTAAAGACTCATAAGAGAACGCACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAATTTTTCTGATTGCAGTCATTTAAAGACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTACGATTGCAGTAATTTAAAGACTCATAAGAGAACACACACGGGAGAGAAACCGTACTGCTGCGAATACTGTAATAAGAAATTTCCTGATTGCAGTAGTTTGAACACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATCAGAAATTTTATGATTGCAATACTTTAAAGAGACATATGACAACACACAGTGCGGAGAAACCGTTCCGCTGCGAATTATGTAGTAAGCAATTTGCTCAATACGGTACTTTAAAGAGACATACGAGAAGACACACGAGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTATAAGCGCAATAATTTAATGAGACATACGAGGACACACACGGGGGAGACACCGTACAGGTGCGAATACTGTAATAAATTTTTTTCTGATGGTAGTTGTTTAAAGACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGTTGCGAATATTGTGATCAGAAATTTTCTCAACACGGTAATTTAAAGACTCATAAGAGAACACATACCGGTGAGAAACCGTACAGCTGCGAATACTGTAATAGGAAATTTTCTGATGGTAGTCATTTAAACACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAGTACTGTAATGAGAAATTTTCCGATAGTAGTAGTTTAAACACTCATAAGAAAACACACATGGGGGAGACACCGTACGTTTGCGAATACTGTGATAAGAAATTTTCTGATTGCAGTAGTTTAAACACTCATAAGAGAACACATACGGGGGAGAAACCGCACAGCTGTGAATTCTGTAGTAAGAAATTCGCTCAATACGGTAATTTAAAGAGACATACGAGAACACACACGGGGGAGAAGCCGTACAGTTGTGAATACTGTAATAAGAAATTTTCTGATTGCAGTAATTTAAATACTCATAAGAGAAGACAACACGGGGGAGAAACCATACATTTGTGA
Protein Sequence
MSYNDVEIKQEQVDYLVLPDGDEFIKIEIREENQPYSEQNLGEQNVTAKAKSKNKTEEIQSKCEDPLKNDEDNLKKHKRTNTGEKPYSCEYCNKKYSASDHLKRHKRTHTGEQPHCCEYCNKKFSDFSNLKTHKRTHTGEKPYSCEYCNKKFAQYSNLKAHKRTHTGEKPYSCEYCNKKFSSCSNLKTHKRTHTGEKPFSCEYCNKKFYDSSTLKRHNRIHTGEKPYSCEYCNKKFFDCSHLKTHKRTHTGEKPYSCEYCNKNFSDCSHLKTHKRTHTGEKPYSCEYCNKKFYDCSNLKTHKRTHTGEKPYCCEYCNKKFPDCSSLNTHKRTHTGEKPYSCEYCNQKFYDCNTLKRHMTTHSAEKPFRCELCSKQFAQYGTLKRHTRRHTREKPYSCEYCNKKFYKRNNLMRHTRTHTGETPYRCEYCNKFFSDGSCLKTHKRTHTGEKPYSCEYCDQKFSQHGNLKTHKRTHTGEKPYSCEYCNRKFSDGSHLNTHKRTHTGEKPYSCEYCNEKFSDSSSLNTHKKTHMGETPYVCEYCDKKFSDCSSLNTHKRTHTGEKPHSCEFCSKKFAQYGNLKRHTRTHTGEKPYSCEYCNKKFSDCSNLNTHKRRQHGGETIHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00925933;
90% Identity
iTF_00925933;
80% Identity
-