Lphl025719.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995186.1:9517188-9518909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3e-05 0.0011 19.9 3.4 1 23 40 62 40 62 0.96 2 19 9.6e-07 8e-05 23.4 1.0 1 23 68 90 68 90 0.99 3 19 1.6e-06 0.00013 22.7 0.6 1 23 96 118 96 118 0.98 4 19 1.6e-06 0.00013 22.7 4.8 1 23 124 146 124 146 0.99 5 19 2.7e-07 2.3e-05 25.1 3.0 1 23 152 174 152 174 0.99 6 19 3.7e-07 3.1e-05 24.7 2.7 1 23 180 202 180 202 0.99 7 19 6e-06 0.0005 20.9 4.4 1 23 208 230 208 230 0.98 8 19 2.9e-06 0.00024 21.9 1.5 1 23 236 258 236 258 0.99 9 19 1.4e-06 0.00012 22.9 2.5 1 23 264 286 264 286 0.98 10 19 2.6e-07 2.2e-05 25.2 3.4 1 23 292 314 292 314 0.99 11 19 2.8e-05 0.0024 18.8 7.7 1 23 320 342 320 342 0.99 12 19 1.7e-05 0.0014 19.5 1.8 1 23 348 370 348 370 0.99 13 19 6.1e-05 0.005 17.7 6.0 1 23 376 398 376 398 0.98 14 19 2.9e-06 0.00024 21.9 1.7 1 23 404 426 404 426 0.98 15 19 3.6e-07 3e-05 24.8 3.1 1 23 432 454 432 454 0.99 16 19 1.7e-05 0.0014 19.5 1.8 1 23 460 482 460 482 0.99 17 19 0.00034 0.028 15.4 5.6 1 23 488 510 488 510 0.98 18 19 7.9e-08 6.5e-06 26.8 1.5 1 23 516 538 516 538 0.99 19 19 6.3e-06 0.00052 20.9 5.6 1 23 544 566 544 566 0.99
Sequence Information
- Coding Sequence
- ATGGAATTGTTTTTATTTGGCACAGATCCATTAAAGGACGACCAAGATAATTTAGAACATTCGAAAATTGAAAAGGACAACAAACAAGGTAAAGATGTACAAGAGAGCGAGTTAAAGTTCGCGTGCAAAGTCTGCAACCAGAAGTTTGCACGGAAGTATCACTTGAAGCGACACAAGGCGGTCCACTCCGGGGCCAAGCCGTACGAGTGTGACATCTGCAAGCGCCAGTTCTCCGACAGAAGCTATTTTGTCATTCACATAAGAACACACACCGGAGAGAAACCCTATGCCTGTGATGTATGCGATAAAAAGTTTCCGACGAGTACGGCTTTAAAATTGCATAAAAGAACACACACAGGGGAGAAGCCGTACAGCTGTGATATTTGCAATCGCAAATTTTCTCGGAAGGGGCATTTCACGATACATTACAGAACACATACCGGTGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGATGGTAGTCAATTAAAGAAACATACTAGAACACACACGGAAGAGAAATCGTACAGCTGTGACATTTGCAATCGCAAATTTTCTCGGAGGGGGAATCTCACGACACATTTCAGAACACATACCGGTGAGAAACCGTACAGTTGTGAATACTGTAATAAGAATTTTTCTGATGGTAGTCATTTAAAGAAACATACTACAACACACACGGAGGAGAAACCGTACAGCTGTGATATTTGCAATCGCAAATTTCCTTATAAAGGGAAACTAACGATACATTACAGAACACATACCGGTGAGAAACCGTACAGCTGCGAATACTGTAATAAAAAATTTTCTTTACGCAGTAATTTAAATATACATAATAGAACACACACGGGGGAGAAACGCTACAGATGTGAATTATGTAATAAGAAATTTTCTAGTTTAAGTAATTTAAAGAGTCATAAGAGAACACACACGGGGGAGAAACCGTACACCTGCAAATACTGTAATAAGAAATTTTATGATCGCTGTGATTTAAAGAGACATAATAGAACACACACAGGGGAGAAACCGTACAGCTGTGAATTATGTAATAAGAAATTTTCTATTTTATGGAATTTAAAGAGTCATAAGAGAACACACACGGGGGAGAAACCGTATAGCTGCGAAAACTGTAATAAGAAATTTTATGATCGCTGTGATTTAAAGAGACATAATAGAACTCACACAGGGGAGAAACCGTACAGCTGTGAATTATGTAATAAGAAATTTTATGATCGCAGTGATTTAAATATACATAATAGAACACACACAGGGGAGAAACCGTACAGCTGTGAATTATGTAATAAGAAATTTTCTAGTTTAAGTAATTTAAAGAGTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGTGAATTATGCAATAAGAAATTTTCTATTTTATGGAATTTAAAGAGTCATAAGAGAACACACACGGGGGAGAAACCGTATAGCTGCGAAAACTGTAATAAGAAATTTTATGGTCGCTGTGATTTAAAGAGACATAATAGAACACACACAGGGGAGAAACCGTACAGCTGTGAATTATGTAATAAGAAATTTTATGATCGCAGTGATTTAAATATACATATGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCCCATAATTTAAAGACTCATAAGAGAACACACGGGGGAGAAACCGTACAGCTGTGA
- Protein Sequence
- MELFLFGTDPLKDDQDNLEHSKIEKDNKQGKDVQESELKFACKVCNQKFARKYHLKRHKAVHSGAKPYECDICKRQFSDRSYFVIHIRTHTGEKPYACDVCDKKFPTSTALKLHKRTHTGEKPYSCDICNRKFSRKGHFTIHYRTHTGEKPYSCEYCNKKFSDGSQLKKHTRTHTEEKSYSCDICNRKFSRRGNLTTHFRTHTGEKPYSCEYCNKNFSDGSHLKKHTTTHTEEKPYSCDICNRKFPYKGKLTIHYRTHTGEKPYSCEYCNKKFSLRSNLNIHNRTHTGEKRYRCELCNKKFSSLSNLKSHKRTHTGEKPYTCKYCNKKFYDRCDLKRHNRTHTGEKPYSCELCNKKFSILWNLKSHKRTHTGEKPYSCENCNKKFYDRCDLKRHNRTHTGEKPYSCELCNKKFYDRSDLNIHNRTHTGEKPYSCELCNKKFSSLSNLKSHKRTHTGEKPYSCELCNKKFSILWNLKSHKRTHTGEKPYSCENCNKKFYGRCDLKRHNRTHTGEKPYSCELCNKKFYDRSDLNIHMRTHTGEKPYSCEYCNKKFSASHNLKTHKRTHGGETVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -