Lphl025726.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
-
Assembly
GCA_905333005.1
Location
HG995186.1:9289033-9291324[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00018 0.015 16.3 5.0 1 23 8 30 8 30 0.99
2 27 1.1e-05 0.00094 20.0 3.0 1 23 36 58 36 58 0.99
3 27 2e-05 0.0017 19.2 5.8 1 23 64 86 64 86 0.98
4 27 1e-05 0.00084 20.2 6.2 1 23 92 114 92 114 0.99
5 27 7.6e-07 6.3e-05 23.7 2.4 1 23 120 142 120 142 0.99
6 27 2e-06 0.00017 22.4 3.1 1 23 148 170 148 170 0.99
7 27 2.7e-06 0.00022 22.0 3.0 1 23 176 198 176 198 0.99
8 27 1.2e-06 0.0001 23.1 4.6 1 23 204 226 204 226 0.98
9 27 0.0026 0.22 12.6 4.6 1 23 232 254 232 254 0.95
10 27 7.6e-07 6.3e-05 23.7 2.4 1 23 260 282 260 282 0.99
11 27 4.4e-07 3.6e-05 24.5 3.7 1 23 288 310 288 310 0.99
12 27 7.3e-07 6e-05 23.8 3.9 1 23 316 338 316 338 0.99
13 27 9.4e-07 7.7e-05 23.4 4.3 1 23 344 366 344 366 0.99
14 27 2.1e-05 0.0017 19.2 8.8 1 23 372 394 372 394 0.99
15 27 2.4e-06 0.0002 22.2 7.7 1 23 400 422 400 422 0.98
16 27 3.8e-06 0.00032 21.5 1.8 1 23 428 450 428 450 0.99
17 27 4.5e-07 3.7e-05 24.4 4.7 1 23 456 478 456 478 0.99
18 27 9.5e-07 7.9e-05 23.4 6.6 1 23 484 506 484 506 0.99
19 27 9.7e-05 0.008 17.1 1.8 1 23 512 534 512 534 0.99
20 27 2.3e-05 0.0019 19.1 5.9 1 23 540 562 540 562 0.98
21 27 8.5e-05 0.007 17.3 3.5 1 23 568 590 568 590 0.99
22 27 0.00018 0.015 16.2 2.7 1 23 596 618 596 618 0.99
23 27 6.6e-07 5.5e-05 23.9 2.9 1 23 624 646 624 646 0.99
24 27 8.2e-07 6.8e-05 23.6 6.6 1 23 652 674 652 674 0.99
25 27 0.002 0.16 13.0 5.7 1 23 680 702 680 702 0.98
26 27 5e-07 4.1e-05 24.3 3.5 1 23 708 730 708 730 0.99
27 27 2.4e-06 0.0002 22.2 6.6 1 23 736 758 736 758 0.99

Sequence Information

Coding Sequence
ATGAACACAGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTTTCATAATTTAAAGGGGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGACATTTTTTGCTTCCAATAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTCATAAGAAATTTTATAATCGCTATGATTTAAAGATACATAATAGAACACACACAGGGGAGAAACCGTACAGCTGTGAATTATGTAATAAGAAATTTTCTAGTTTTAGTCATTTAAAGAGTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTAATGGCAGTTCTTTAAAGGCGCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTAAATACGGTAATTTAATTACTCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGACATTTTCTGCTTTCTATAGTTTACAGACGCATCAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTAATCGCAGTTATTTAAAAACACATAATAGAACACACACAGGGGAGAAACCGCACTGCTGCGAATACTGTAATAAGAAATTTTCTATTTTAAATAATTTAAAGATTCATAAGATAATACACACAGGGAAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTAATGGCAGTTCTTTAAAGGCGCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGGTAAGACATTTTTTACTTCCAATAGTTTAACGAAGCACAAGAGAACACACACGGGGGAAAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCCTATAATTTAAAGAGGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTACTAAGAAATTTGATCATCCCAGTGATTTAAATAGACATAAGAGAACACACACGGGGGAAAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGATTGCCGTCATTTAAAAACTCATACGAGAACACACATGGGGGAGAAACCGCACAGCTGCGAATACTGTAATAAGGAATTTTCTACTTCCCATAATTTAAAGAGGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGACATTTTTTGCTTCCGATAGTTTAATAAAGCACAAGAGAACACACACGGAGGAGAAACCGTACAGCTGTGAATACTGTGATAAGAAATTTTCTGATAGTAATCATTTAACGACTCATACGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTTATAAGAAATTTTCTGATAGTAGTCATTTAAAGAGACATAAGAGAACACACACGGAGGAAAAACCATACAGCTGCGAAGACTGTGATAAGAAATTTTTAGCTTCAGATTATTTAAAGAGACACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCCCATAATTTAAAGACTCATAAGAGAAAACACACGGGGGAAAACCCGTACAGCTGCGAATACTGTGATAAGACATTTTTTGCTTTCAATAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTGATAAGATATTTTTTGCTTTCAATAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTACTAAGAAATTTGATTATCCCAGTGATTTAAAGAGACATAAGAGAACACACACGGGGGAAAAACCGTACAGTTGTGAATACTGTAATAAGAAATTTTGTACTTCCAATAATCTTACGAGGCATACGAGAACACACACGGGGGAGAAACCGTACTGCTGCGAAAACTGTGATAAGACATTTTTTGCTTTCAATAGTTTAACGAAGCACAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTACTAAGAAATTTAATTATCCCAGTGATTTAAAGAGACATAAGAGAACACACACGGGGGAAAAAGCGTACAGTTGTGAATACTGTAATAAGAAATTTTGTACTTCCAATAGTCTTACGAGGCATACGAGAACACACACGGGGGAGAAACCGTAG
Protein Sequence
MNTGEKPYSCEYCNKKFSAFHNLKGHKRTHTGEKPYSCEYCDKTFFASNSLTKHKRTHTGEKPYSCEYCHKKFYNRYDLKIHNRTHTGEKPYSCELCNKKFSSFSHLKSHKRTHTGEKPYSCEYCNKKFSNGSSLKAHKRTHTGEKPYSCEYCNKKFSKYGNLITHKRTHTGEKPYSCEYCNKTFSAFYSLQTHQRTHTGEKPYSCEYCNKKFSNRSYLKTHNRTHTGEKPHCCEYCNKKFSILNNLKIHKIIHTGKKPYSCEYCNKKFSNGSSLKAHKRTHTGEKPYSCEYCGKTFFTSNSLTKHKRTHTGEKPYSCEYCNKKFSASYNLKRHKRTHTGEKPYSCEYCTKKFDHPSDLNRHKRTHTGEKPYSCEYCNKKFSDCRHLKTHTRTHMGEKPHSCEYCNKEFSTSHNLKRHKRTHTGEKPYSCEYCDKTFFASDSLIKHKRTHTEEKPYSCEYCDKKFSDSNHLTTHTRTHTGEKPYSCEYCYKKFSDSSHLKRHKRTHTEEKPYSCEDCDKKFLASDYLKRHKRTHTGEKPYSCEYCNKKFSASHNLKTHKRKHTGENPYSCEYCDKTFFAFNSLTKHKRTHTGEKPYSCEYCDKIFFAFNSLTKHKRTHTGEKPYSCEYCTKKFDYPSDLKRHKRTHTGEKPYSCEYCNKKFCTSNNLTRHTRTHTGEKPYCCENCDKTFFAFNSLTKHKRTHTGEKPYSCEYCTKKFNYPSDLKRHKRTHTGEKAYSCEYCNKKFCTSNSLTRHTRTHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00925929;
90% Identity
iTF_00925929;
80% Identity
-