Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00051 0.64 10.6 4.7 2 38 73 105 72 110 0.81

2 9 0.0011 1.4 9.5 1.7 18 40 116 135 106 138 0.84

3 9 0.0051 6.4 7.4 3.2 19 38 145 161 140 166 0.88

4 9 0.005 6.3 7.4 2.9 18 38 172 189 163 194 0.82

5 9 0.0047 5.9 7.5 3.5 18 38 200 217 191 222 0.81

6 9 0.64 8.1e+02 0.7 2.2 18 27 228 237 217 250 0.74

7 9 0.0028 3.5 8.3 3.9 17 38 255 273 240 278 0.82

8 9 0.0069 8.7 7.0 1.1 18 38 284 301 275 306 0.80

9 9 0.0044 5.5 7.6 4.3 18 43 312 334 301 335 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00051	0.64	10.6	4.7	2	38	73	105	72	110	0.81
2	9	0.0011	1.4	9.5	1.7	18	40	116	135	106	138	0.84
3	9	0.0051	6.4	7.4	3.2	19	38	145	161	140	166	0.88
4	9	0.005	6.3	7.4	2.9	18	38	172	189	163	194	0.82
5	9	0.0047	5.9	7.5	3.5	18	38	200	217	191	222	0.81
6	9	0.64	8.1e+02	0.7	2.2	18	27	228	237	217	250	0.74
7	9	0.0028	3.5	8.3	3.9	17	38	255	273	240	278	0.82
8	9	0.0069	8.7	7.0	1.1	18	38	284	301	275	306	0.80
9	9	0.0044	5.5	7.6	4.3	18	43	312	334	301	335	0.88

Coding Sequence: ATGTCATATAATGATGTGGAGATCAAACAAGAACAAGTGGATTATCTGGTGCTGCCTGATGGAGATGATTTTATTAAAATTGAAATAAGAGAAGAAAATCAACAATATTCTGAACAAAACGTAGACGAACAAAATGTTACTGCCAAAGCAAAAAGTAAAAACAACACTGAAGAGATTCAAGGCAAATGTGAAGATCTATTAAAGGACGACGAAGATAATTTAAAGAAACATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCAAATAATTTAAAGAAGCATAAGAGAACACACACGGGGGAGAAACCGTACAGCTGCGAATACTGTAATAAATTTTTTTCTACTAGCAGTAATTTAAAGAGTCATACTAGAACACACACGGGGGAGAAACCGCACTGCTGCGAATACTGTAATAAGAAATTTTATTATAGCAGTAATTTAAAGACTCATAAGAGAACACACACGGGGGAGAAACCGCACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCGTATAATTTAAAGACGCATAAGAGAACACACACGGGGGAGAAACCACACAGCTGCGAATACTGTAATAAGAAATTTTCTGCTTCCCATACTTTAAAGACTCATAAGAGAACACACACGGGGGAAAAACCATACAGCTGCGAATACTGTGACAAGAAATTTTATGATCGCGATGTTTTAAAGACTCATAAGACAACACACACAGGGGAAAAACCGTACAGCTGCGAATACTGTAATAAGAAATTTTCTGTTTCCCATAATTTAAAGACTCATAAGAGAACACACACGGGGGAAAAACCATACAGCTGCGAATACTGTGACAAGAAATTTTCTGTTTCCAATAATTTAAAGATTCATACGAGAACACACTCGGGGGAGAAACCGTACAGCTGCGAATACTGTGACAAGAAATTTTCGGATTGCAGTAATTTAAAGACTCATAAGAGAACACAACACGCGGAAGAAACCAGTCATTTGTTGTGA
Protein Sequence: MSYNDVEIKQEQVDYLVLPDGDDFIKIEIREENQQYSEQNVDEQNVTAKAKSKNNTEEIQGKCEDLLKDDEDNLKKHKRTHTGEKPYSCEYCNKKFSASNNLKKHKRTHTGEKPYSCEYCNKFFSTSSNLKSHTRTHTGEKPHCCEYCNKKFYYSSNLKTHKRTHTGEKPHSCEYCNKKFSASYNLKTHKRTHTGEKPHSCEYCNKKFSASHTLKTHKRTHTGEKPYSCEYCDKKFYDRDVLKTHKTTHTGEKPYSCEYCNKKFSVSHNLKTHKRTHTGEKPYSCEYCDKKFSVSNNLKIHTRTHSGEKPYSCEYCDKKFSDCSNLKTHKRTQHAEETSHLL

Sequence clustering based on sequence similarity using MMseqs2