Lphl014153.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995164.1:17860012-17877384[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-09 2.2e-06 27.8 0.0 1 44 166 209 166 210 0.93 2 3 1.4 1.8e+03 -0.7 0.0 28 39 374 385 374 389 0.75 3 3 3 4e+03 -1.8 0.0 30 41 521 532 521 534 0.85
Sequence Information
- Coding Sequence
- ATGAATAAAGGAATGAATAAAACGTTGGACTCTAATTCCTGTTGTAAGTGCTGTTTAGAAGAGAGTGAATTAAAAAATATGTGGGATGAATATACCATTAATGGACAGCGAGAAATTTACGGCGAAATGTTGTCGGAATGTTTTTCATTGAATTGGCAGCCTAAAGAAACATACATAGAACAGATATGCCTGTCATGTGTCGCCAGACTCAAAGATGCACTTAGCTTTAAAAAGGTTATTCTACTTTCAGAGCAATTTTTGACAGAACAAATTGAAAAAGCATCCAAATGTGAGGTTAAAGAAGAGATTGAAGATTCAGAAACAGAATTCGCAACAGAGTATTTGATGGATTATCAGGATGAGGAATCTGCTAAAAAAGTTATAGACCCACAACCTTCACAAGACGATAAGAAAATATATCAACGCCTAAAGGTGAAATTGGAACCGATGAATGGAAAAGATGGATTGAGATCTAGCAAGCGGCTAAAAGATTTCTCCGAGGAAGACCTACAGAAATGCATTGAAGCTGTAAAAAATAAAACCATGTCTCAAATAAAAGCATCGGAGACATTCAACATCCCGGTGCGGACTTTAAGAAAGGCTCTACACAATATTCCTACTTACAAAGCTGTATTCAGACCAAGGGTAGAAATGATGCAACAACAAGACAATATAGATTGTCTATTAAGAAACAGTAACGCAACACCGATCCGAGGATTCTTTGGGAGAGGATACGCTTGCTATTACTGTCCAAAGAAATATGAACACGCTCAAAAATTAAAAGAACACACGTTGACCGAACACGGCGGCGACAAATTCGAAAGACTTCGGGTATTACGCGACCACAACATTAAAATGGACATCACAGAACTAAAGTGCACCATTTGTAACGAAAATATCAATACAATTGACCTAATGTGGGAACATTTTGATACGGTTCATCAATTGACGATCCACAAGAATTTGTTGAATCAAATCGTTTCGTTCAAGTTGGACGACTCGGAAGTATTGAAATGTGTTGTTTGCCTACAGGAATATAGGAGTTTCAAACTTTTAAACGATCACATGAACATGAAACACTTCAAAAATTACGAATGCGATAAGTGTGGGCGTGGCTTTATAAGTCGCAGCACTTTACGCGCGCACGGCTACAGACACGAGACGGGAGAAACGTTCGCTTGCCAATTCTGTCCAAAAAGCTTTCCGACTAAAGTGCGGAGACGCGAACACGAAAAGTGGGTGCACAAGGGACCAGATAAAAGACTCAAATGTGCATTTTGTGAAGAGAAATTCGCAGATATGACCCAAAAGTATAAACATGAAGCTAAATATCACGGCACTGAAATTCCCGAATATAAATGCCAAGCTTGTAGCAAATCGTTCAAGAGTCAAAAATCGTTGACGGCTCATATTAAGGCCTATCATCTGCTGTTACGCAATCATAAATGTACTGTATGTGATCTGAGCTTCTTCGAAAAGAACCAACTGAAAATGCACATGATAAAACACACCGGAGCAAGAGAATTCAAGTGCGACGTTTGTTTGAAGAGTTTCGGCCGGAAAAGTACGTTGAGGGAGCATATACGTATACACGAAGACGATAGAAGATTCCCGTGCACATATTGTACTATGGCGTTCATACAAAAATGCAGTTGGCGCTCGCACATGCGCACGGCGCACGGACAAAACGTATAA
- Protein Sequence
- MNKGMNKTLDSNSCCKCCLEESELKNMWDEYTINGQREIYGEMLSECFSLNWQPKETYIEQICLSCVARLKDALSFKKVILLSEQFLTEQIEKASKCEVKEEIEDSETEFATEYLMDYQDEESAKKVIDPQPSQDDKKIYQRLKVKLEPMNGKDGLRSSKRLKDFSEEDLQKCIEAVKNKTMSQIKASETFNIPVRTLRKALHNIPTYKAVFRPRVEMMQQQDNIDCLLRNSNATPIRGFFGRGYACYYCPKKYEHAQKLKEHTLTEHGGDKFERLRVLRDHNIKMDITELKCTICNENINTIDLMWEHFDTVHQLTIHKNLLNQIVSFKLDDSEVLKCVVCLQEYRSFKLLNDHMNMKHFKNYECDKCGRGFISRSTLRAHGYRHETGETFACQFCPKSFPTKVRRREHEKWVHKGPDKRLKCAFCEEKFADMTQKYKHEAKYHGTEIPEYKCQACSKSFKSQKSLTAHIKAYHLLLRNHKCTVCDLSFFEKNQLKMHMIKHTGAREFKCDVCLKSFGRKSTLREHIRIHEDDRRFPCTYCTMAFIQKCSWRSHMRTAHGQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926041;
- 90% Identity
- iTF_00926041;
- 80% Identity
- iTF_00926041;