Lphl016785.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995178.1:15176361-15183744[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-10 5.6e-07 29.7 0.0 4 39 135 171 134 175 0.90 2 4 5.1e-12 6.8e-09 35.8 0.2 2 39 187 224 186 227 0.92 3 4 5.9e-09 7.7e-06 26.1 0.2 3 45 243 295 241 295 0.84 4 4 4.9e-18 6.4e-15 55.1 0.0 2 43 303 345 302 347 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCACGACCTAGGTTTGGTGAAATGCGAGCCGACTTCGGACGAAGACGACAGCAACCAGGGATCTCTAGAGGAGCTGGTGCCAGCCCCTGCGGGTCCGGCGGCGACGCCCGTTCGGGAGCACCTGCCCTCGCCGAGGGAGGCCTCGCTGGCTACCCTGCAGCCGGCCGCGCTGGGGAATGCGATGGGTGCCTCAATCATCGACATGCATGTGAAGATGATGAATGTGAAAGAAGTAGCAGACTCAGCGGAGTTTGTGCCACTCATGGGAGTCAAAGATGAACCGGCGTCTGAAGGGGAGCAACATGCAATGAGCGGCGACGACACGAGCGACTCGAGTGGCGCGCCCGAGCCGGTGGGGCCCGGCCGCGGCAGCCCCAAGGCGTGGTCGGCGCGGGACATGGACAACGCGCTCGACGCGCTGCGGACGCACCACATGAGCCTCACTAAGGCATCTGCCACATTTGGTATCCCGTCCACTACGCTCTGGCAGCGCGCGCACCGCCTGGGCATCGACACGCCGAAGAAGGACGGCGCCTCCAAGTCCTGGAGCGAGAAGGACCTGAAGGCAGCCCTGCACGCGCTGCGAGCCGGCACCATCTCCGCCAACAAGGCGAGCAAAGCGTACGGCATCCCCAGCAGCACCCTCTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCGGACCTGGCGCGCGCGCTCGCCGCGATTACAGACACACCCGGGACCTGGCACCGCGGTGCACGCGGGGCCCACGTGCAGCGGGCCACTGCGCACTACGGCATCCCCACCGGAACGTTGTACGGGAGGTGCAAGCGAGAGGGCATAGAGCTGTCTCGCTCCAACCCGACCCCCTGGTCGGAGGGAGCTATGGGGGAGGCGCTGGAAGCCGTGAGGGTCGGCCAGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGAGGTGCAAGTACCAGCTGCCGCAGGATACGCAGCCACCTCAGCCAGACGCACTCAATCCACCCTCCTCCAGCTCCCCCGAGGAGAGTCCCTCCGATGTCCACACGTTCAGCGACTCACTCTCGTCTCCGTTCAGCGACGTTCACCACGCGCTGTTCGCGCTGGAGCCCTACGGACTGGCATATTGCGACGTCACCAGCTGA
- Protein Sequence
- MPGHDLGLVKCEPTSDEDDSNQGSLEELVPAPAGPAATPVREHLPSPREASLATLQPAALGNAMGASIIDMHVKMMNVKEVADSAEFVPLMGVKDEPASEGEQHAMSGDDTSDSSGAPEPVGPGRGSPKAWSARDMDNALDALRTHHMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEKDLKAALHALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAITDTPGTWHRGARGAHVQRATAHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLPQDTQPPQPDALNPPSSSSPEESPSDVHTFSDSLSSPFSDVHHALFALEPYGLAYCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -