Lnic037042.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979691.1:3740846-3753196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 3.7e+02 3.1 1.1 5 21 265 281 263 282 0.91 2 13 0.00028 0.031 15.9 1.1 1 23 293 316 293 316 0.92 3 13 0.0044 0.49 12.2 0.1 2 21 354 373 353 374 0.94 4 13 1.4 1.6e+02 4.2 2.2 1 20 678 696 678 698 0.82 5 13 0.21 23 6.9 2.4 1 23 710 732 710 732 0.96 6 13 0.0022 0.24 13.1 0.3 2 23 738 759 737 759 0.97 7 13 2.1 2.3e+02 3.7 0.7 1 10 782 791 782 803 0.71 8 13 0.017 1.9 10.3 0.2 2 23 880 901 879 901 0.96 9 13 5.7e-07 6.3e-05 24.4 2.7 1 23 907 929 907 929 0.99 10 13 0.00054 0.06 15.0 0.3 2 23 935 956 934 956 0.96 11 13 0.00086 0.096 14.4 1.8 2 23 963 985 962 985 0.96 12 13 0.033 3.7 9.4 0.4 1 20 992 1011 992 1011 0.86 13 13 0.00077 0.085 14.5 1.0 3 23 1024 1045 1023 1045 0.97
Sequence Information
- Coding Sequence
- atgGTTCCAGAGCCGAAAGTACCTAAAACCATAAAAAAGTCCGCATACAGACTAGAAACAAAAAAGGTGGTAGTAAAACTACCAGAGCCAACCTTTTCAAACCAAGAAGAGGTAGACACGAGCGTCCTAAGAAAAATCAACGCAGCAGCTAGAGAAGATGACGAGCCACATACTACGATATCGCCAAGAAAGTTTGAGATTAACATTGAAATAGAATCatgtgacgatgatgatgagattGAAGGGCTTCCTGATGAAACTCGTTTAACACCGGATGTTAAAGAAACGATAAAAGCCACGACCGAGCCTATTGAACTTTCTCGAGAAATCATTCTTAATGCTGCCGAGAATATACTCCAAGATTCAACAGATATTGCTGATAAAATTCTAAATCTATATGTTAGGAATACGATAGGGTATGAGGAGAAGAGGAATCTGGTACAAGATTGGTATGATCAGCGAATACAACAGACCTTAGATGAATGGCGTACTTGGCAGTTCCGTAGTTTTCACAGAGAAGACCCTCTTTTCTACAAATGCTATATCTGTACTCGTTCCTGGTGGCATCTGACAGATTTCCGCAACCATTTGTCTTCGAAACATACTAATGATTTATTGGTTATAATAGCTTTGGAAAAATATGAAATGCATGAAGCTAATTTGATAGCGTACCACCAAAGGCTTGTTGTTATAAAAGATATATATACAGAAGGACTTTGTTACCGATGCGGTAAGGATTATGGTGCTCACGAGTTAGAATCGAGGTTCAAGGCGAAATATTACAAAAACGAAGGTTgcacaaaacagttttttagtTGTATGGGTCTAAGACACCATATATCTAGTTGTCCTACTTGTAACAATGAGTATAAGCTCTTCAAATGTGATATATGTAAGTCAAGATTTAAAACAAAGGAGGAGTTAAATAGTCATTTAGTGTTGTCTCATTCCGTTCGGTCTGATATACCGATAATGTCTCACTACAAGACCTGCAAGCGCTGCTCACAGAGGTATTCTTgtcaatatttacataaatgcgGACAAAAGGGACCTCATAGCGAGTGTCCACACTGTCTACAGAGTTTTTCAAATGTCATGTCTTTGGAAATTCATATGGAAAGGTCAAGTAAACCTTACAAATGTGAAGTTTGCCGAGCGATCATGCCTTATAGCTGTAAGAAATATGAACATATGTTGGAACACACAGACAAGTATATGATAGTACGGAAATGCGTAACGTGTGAGggtttgaaagtatttttaaataacgaAGATGCAGTGGCACATTGGTGGTTGAAACATGagttcaaaaaaacaaaacgtcagAGCTATTTTCCTAAAATTTTAGTACCGTCGTCCTGTGTATATGAAAGTTTAGCAGAATCAGAATGGAATCAACAAATATCGGTACTAGAAGAACAAGAATCGGAACTAGAAGCACAAGAATTGGTACCGGAAGACCAAAaatcaataaagaaagaaaaagaatcgGTACTGGAAGAACAAGAATCAGTACTGGAAGGAACAGAATCCATACCAGAAGAAGAAGAATCCGTATCGGAAGAAGAATCAGTATTAAAAAGTGAAAGAGAATCTGTTTCAGTATGTGAACAGAAATTGTTACAAGCAGAGCTAGAATCAGCAACGGAATTTTTATTGGGAACTGTTGTTGTCAAAgAAGAACCACAAGATTCAGAAGACAGCCCAAGACTTGTAATCAAAGAAGAACGATTCGATGAATTTGAAAACCATATAAATGAAGAGAATCATGCTGAGAACTTTGAACACCAAATAAGTGTCAAAGAAGAATATGTAGAGGAAGAGTATGAAGAAGATATTATCAAACTGAACTTCAATATAGAAGAATTATTAGGGAAACAAGAATCAATTCAAAAAGATGACGATCATACTGTAGAACAGACAGAAGAGAACCAAGAATCAGAAAATAATGACCCACAAGAATTGAAAGAAGATTCCATGCTAGAACCAGACGTTATTTTAGATGGGGATGAtaggaaaaacaaaaaactataCAGATGTACTAAATGTGGATTTACAGCGAAGCATAAACAATATAGAAATCATATTAACAATGACTGCGGCTCCAACCCAAACAAGCATAAAATGTACACATGCACAAAATGTCAAGTTAAATTTGCgtctatgaaaaaatatttgatacatTTCAAAGAGCATGGATACAAACACCTGTCCTGTCCTGATTGCTTGAAAGAATTCGACACGTACACAAGTCTAGGGCAGCACCTGCAACGACACATCAAGCACTGTTTTGTCCGAGTAAAAATGATCACGCACGCAGGCAAGGCTATGACAAAACCTGACTATAAATGCAAAAAATGCGGACAGATCATAGTTTTTCGTAACTTTTTTGAGCATTGGGAGCTGCATATAAATGCTCAGCCCACGCATCCCATTAAAGTGACCTCGAGGCCTAAGCATAAACATGGAGAATTGCATGAAACTATCATAAAGGAGTGCATtgccCTATTAAACAAACAGCCAAAAGAATGCAACCATTGCCACCGATGGTTCAAACGGGTCAACGAATGTAAACGTCACATTATAGAACATCTATTAAATGACGCATACAACCAGAAACATATATACAACGAACTCAGATGCCAAGTCTGTGAACAAGGTTTTGCTCTACCGGAGAGATATAAGCAACATATGCGCGACCACGCGTCCCTGCCTGTGTACAAGTGTGAACTGTGTGATCGTACGTTCAGTGACTCAAGCAACTTTACAAAGCATAAAAAAGTGCATAATTTGAAAGTGATTGTCTGCGATTTGTGCGGTAAAAAGTTTCAGTCGaaaatttctatggagaagcaCATTGTGAAACACATGGACACACAGCCGATCACCTGCAAGATTTGCAACAAAATCTTCTACTTCGAAACTTCTTATCGACGCCATGTAAGATATTTTCACGAAAGACCCATCATCGGCTACCGGTGCGTTATCTGCGGTAAACGCTTCGAAAGTctaaaatttaaatgggaccatatGTGGGAGGTACATAAGGAGAGGAAGCAGAAAGCCGACTGTCCCATATGCCACCAGTCCTTCCGGAAGTATTCCGATGTCCGTCTCCACGCACGAGTAAACCATCTCACGGAAGTTTCAGTGTTAAACGTCAAAAAACAGGCAACAAAGTCTAACATAGATATTGATAACTACTCAGGAGATCCTGCAAAGATCAAAGTTGGGAGGATGGAGACTCTGGTAGTgtatgattcagattga
- Protein Sequence
- MVPEPKVPKTIKKSAYRLETKKVVVKLPEPTFSNQEEVDTSVLRKINAAAREDDEPHTTISPRKFEINIEIESCDDDDEIEGLPDETRLTPDVKETIKATTEPIELSREIILNAAENILQDSTDIADKILNLYVRNTIGYEEKRNLVQDWYDQRIQQTLDEWRTWQFRSFHREDPLFYKCYICTRSWWHLTDFRNHLSSKHTNDLLVIIALEKYEMHEANLIAYHQRLVVIKDIYTEGLCYRCGKDYGAHELESRFKAKYYKNEGCTKQFFSCMGLRHHISSCPTCNNEYKLFKCDICKSRFKTKEELNSHLVLSHSVRSDIPIMSHYKTCKRCSQRYSCQYLHKCGQKGPHSECPHCLQSFSNVMSLEIHMERSSKPYKCEVCRAIMPYSCKKYEHMLEHTDKYMIVRKCVTCEGLKVFLNNEDAVAHWWLKHEFKKTKRQSYFPKILVPSSCVYESLAESEWNQQISVLEEQESELEAQELVPEDQKSIKKEKESVLEEQESVLEGTESIPEEEESVSEEESVLKSERESVSVCEQKLLQAELESATEFLLGTVVVKEEPQDSEDSPRLVIKEERFDEFENHINEENHAENFEHQISVKEEYVEEEYEEDIIKLNFNIEELLGKQESIQKDDDHTVEQTEENQESENNDPQELKEDSMLEPDVILDGDDRKNKKLYRCTKCGFTAKHKQYRNHINNDCGSNPNKHKMYTCTKCQVKFASMKKYLIHFKEHGYKHLSCPDCLKEFDTYTSLGQHLQRHIKHCFVRVKMITHAGKAMTKPDYKCKKCGQIIVFRNFFEHWELHINAQPTHPIKVTSRPKHKHGELHETIIKECIALLNKQPKECNHCHRWFKRVNECKRHIIEHLLNDAYNQKHIYNELRCQVCEQGFALPERYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKISMEKHIVKHMDTQPITCKICNKIFYFETSYRRHVRYFHERPIIGYRCVICGKRFESLKFKWDHMWEVHKERKQKADCPICHQSFRKYSDVRLHARVNHLTEVSVLNVKKQATKSNIDIDNYSGDPAKIKVGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093596;
- 90% Identity
- -
- 80% Identity
- -