Basic Information

Insect: Luperina nickerlii
Gene Symbol: ZNF280A
Assembly: GCA_963855955.1
Location: OY979692.1:5467555-5475736[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00056 0.062 15.0 1.0 3 23 234 255 233 255 0.96

2 10 0.032 3.6 9.4 0.3 2 23 281 303 280 303 0.95

3 10 0.017 1.9 10.3 0.5 2 23 327 348 326 348 0.95

4 10 2.3e-06 0.00025 22.5 1.5 1 23 352 374 352 374 0.98

5 10 0.13 14 7.6 1.2 1 13 379 391 379 392 0.91

6 10 0.0014 0.15 13.8 1.4 3 23 412 433 410 433 0.95

7 10 4.5e-07 4.9e-05 24.7 1.4 1 23 440 463 440 463 0.98

8 10 0.0058 0.64 11.8 0.7 1 23 469 491 469 491 0.96

9 10 9.4e-07 0.0001 23.7 1.4 1 23 497 519 497 519 0.99

10 10 0.00037 0.041 15.6 1.3 1 23 525 548 525 548 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00056	0.062	15.0	1.0	3	23	234	255	233	255	0.96
2	10	0.032	3.6	9.4	0.3	2	23	281	303	280	303	0.95
3	10	0.017	1.9	10.3	0.5	2	23	327	348	326	348	0.95
4	10	2.3e-06	0.00025	22.5	1.5	1	23	352	374	352	374	0.98
5	10	0.13	14	7.6	1.2	1	13	379	391	379	392	0.91
6	10	0.0014	0.15	13.8	1.4	3	23	412	433	410	433	0.95
7	10	4.5e-07	4.9e-05	24.7	1.4	1	23	440	463	440	463	0.98
8	10	0.0058	0.64	11.8	0.7	1	23	469	491	469	491	0.96
9	10	9.4e-07	0.0001	23.7	1.4	1	23	497	519	497	519	0.99
10	10	0.00037	0.041	15.6	1.3	1	23	525	548	525	548	0.97

Sequence Information

Coding Sequence: ATGTCGTACGGCATCGTTTGCCGCTGCTGCCTCGTGCGAGCTCCTGATAAAGACCTGAAGACACAATATTCAATACTGGACAAGACAGAAGTTTACGCCGATATGATAAAAGATTGCTTTGAAATTCAGATACCTCTGGACCCTTGTGACAGTGATGGCGGTATCTGTGAAGTCTGCATCACAAGACTACGGGATGCATGCAACTTCAAAGAACAAGTACAGCAATGTCAGAAGGAGTTTATGTCTAAACTTAACGCTTATAATATTAAAGATGAATCGGCTCCTAAGGTGAAGGAAGAATTCCTAGATTTGGACGACGACAACGGTATATATTTTCTAGAATTAAAAGAAGAAATGTCAGATGACTTCGACGACTTCAAAGACGAGGATGACAACAAGAAACTGGCTGAAATGCTCGGCTTTAATGACGTCACGATCAAGAAGAGGTCCGATAAGCGACGGAGCAAGAAACGACTGCTTCTAGAAAATAGCGGGAAAGAACTGAAATCAAAAAGCCGCGGCATGAAGATTTCCCGCTTTCACTCTCTCACCCAAAAGATCCTGAAGCCTGTAAAGATATCCTCGGGCACCGGCAAGCGCCTGATGAGCGACGCATCTAAAAACAAAGTGAACGTTGATATGCTTCTCAAATACTCCAACTGTACGCCTTTCGCGAACAAGACTATTGCAGGAATCCTCTGCGCCTACTGCAAGACGACGTACAGAGACCTACCTCACCTACGCACACACATACGCGAAGAACATGGCCAGGACAACCTTATAGAGGCCAAACGAATGGACAAGAACAACCTATCTCTCAAAATGGACATCACAGACTTACGATGCAATCTATGCAACGTAAGCGCAGACACcataaccaatttaaaaaaccaTTTGACTATGCAACATGACGTCAAATTTTATCCCGATGTGAACGACTATGTCCTAGAATTCAAGCTAACTGACGGCGAAATTTTAAACTGTGCACTCTGCAACTCCACTTTTGAAACATTTAAAATGTTGCTGCAACACATGAATGGACACTACAGGAACTATATCTGCGAAATATGTGACTTAGGCTTCATAAACCAACATAAATTAAGAAATCATCAACGTACTCATGAAGTAGGGAATTTCAACTGTTCGTTCTGTGACAAAATGTTCAGTACTCGAGTCAGGAAGCTGTGTCATGAGAAGTATACTCATAATCCTAATGCAAGATACACAACAAATTGCCCGCACTGCGAGGAATCCTTCACAAGTTACTATAGAAGAAACCGCCACATGGCTGTCGAACACAACATTTCTGCAGCAACATACAAGTGCAACATCTGCGACAAATCCTTTATCCTCAAATCAAAATTGACGTCACATATAAAAAAAGTTCACCTAATGGAACGAAATCATATCTGCCAGGAGTGTGGACAGGGGTTCTTTATAAAGCAGTCGTTAGACGAGCATATGATAAAGCACAATGGCGAAAGGGTCTTCAAGTGTACCGTTTGCAGTAAGGCTTACGCGAGAAAAAAGACGTTAAGAGAACATATGAGGATTCATAATAATGACAGGAGATTCAAGTGTGGTGTGTGTGCGTTAGCGTTTGTGCAGAAGTGTAGTTTAAAAAGTCATATGCTTTCAAACCATGGGGTTACATTAGCGGAGTATGAGAACGGAAGAAGAGAGATTTGTAGTCCCTAA
Protein Sequence: MSYGIVCRCCLVRAPDKDLKTQYSILDKTEVYADMIKDCFEIQIPLDPCDSDGGICEVCITRLRDACNFKEQVQQCQKEFMSKLNAYNIKDESAPKVKEEFLDLDDDNGIYFLELKEEMSDDFDDFKDEDDNKKLAEMLGFNDVTIKKRSDKRRSKKRLLLENSGKELKSKSRGMKISRFHSLTQKILKPVKISSGTGKRLMSDASKNKVNVDMLLKYSNCTPFANKTIAGILCAYCKTTYRDLPHLRTHIREEHGQDNLIEAKRMDKNNLSLKMDITDLRCNLCNVSADTITNLKNHLTMQHDVKFYPDVNDYVLEFKLTDGEILNCALCNSTFETFKMLLQHMNGHYRNYICEICDLGFINQHKLRNHQRTHEVGNFNCSFCDKMFSTRVRKLCHEKYTHNPNARYTTNCPHCEESFTSYYRRNRHMAVEHNISAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICQECGQGFFIKQSLDEHMIKHNGERVFKCTVCSKAYARKKTLREHMRIHNNDRRFKCGVCALAFVQKCSLKSHMLSNHGVTLAEYENGRREICSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449560;
90% Identity: iTF_00238089;
80% Identity: -