Lnic034818.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979688.1:3098283-3101338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.3 12.8 5.9 1 23 154 177 154 177 0.97 2 17 0.00036 0.04 15.6 0.5 1 23 186 209 186 209 0.97 3 17 0.015 1.7 10.5 0.4 2 23 222 244 222 244 0.97 4 17 0.00043 0.047 15.3 0.8 1 23 253 276 253 276 0.97 5 17 0.00034 0.038 15.7 2.9 1 23 288 311 288 312 0.96 6 17 0.00015 0.017 16.8 0.7 2 23 340 362 339 362 0.97 7 17 0.0015 0.16 13.6 1.2 2 23 372 394 371 394 0.96 8 17 0.085 9.4 8.1 1.2 3 19 400 416 398 419 0.92 9 17 0.00064 0.071 14.8 0.5 2 21 424 443 423 446 0.94 10 17 0.4 45 6.0 2.2 3 23 456 477 455 477 0.93 11 17 0.00029 0.032 15.9 3.5 1 23 482 505 482 505 0.94 12 17 0.00043 0.048 15.3 1.3 2 23 517 539 516 539 0.96 13 17 0.19 21 7.0 0.4 1 23 563 586 563 586 0.92 14 17 0.94 1e+02 4.8 0.1 2 23 593 614 592 614 0.89 15 17 0.047 5.2 8.9 1.6 2 23 620 641 619 641 0.97 16 17 0.021 2.3 10.0 0.1 1 23 707 729 707 729 0.97 17 17 0.093 10 8.0 2.0 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- atgGACCTAGAAGTTAAGgttaaaatagaaaaagatgaattaaaaagaaaagatcCTACCTCATTTTTGCCCGAGGAGCCAATGTCTTATGAgattaagaagaaaaagaagaagaaaaaaaagaagcaaGAAGACCCGTTTAAAGATATTGATGACAAAATGAGTGTTAAGATTGAACCAATAACTCTGTTGGACCCAGAGGTTAAAATAAAGGTTGAGGATATAGAAGTGGAATTGGATTTTAATGATTTTGGAGATAACGGCCTGGTTCATGAAGGTTTTCAGAACGACGATAGTCAAGAACCAGCCGTGAAAATAGAGCCACAAAACCACGACGCTGTTCTCCTTACATTCGAGAGCGTCATAAACGAGAAGAAACCGCCGCTTGTCGCCGATTCCAACGAAATGTTTCAAATTTCAAAGAATGAGCTGCCAGTGGCAACCAAACAGGCCCCGAACCACGTCTGCAAAGTCTGCCATCTAGTCTTTCAATCACAGAAAACTCTACGAATGCATCAGAAACGAAAGCATAAATCCTTTAGAAAGTCCTTCAAGCACGTTTGTGATTACTGTGGCATGGCTTACGAAATGAAAAACAGTTTAGTTGCTCATATTAAGAGGAAGCACGGACCCGATGCAAGGCCTGATGACAGAGAAGAACGAACTTGTGAAATATGTGCGTTGGTCTTCAAAGGAATGGCTCGGTTACGCATGCATATGAGAAGGAAACATGGCTCTTTCCAGGATTCTTTTAAACACGTTTGTGAAGACTGCGGGTTAACTTATGATAAGTACAGAAGTTTGATAGTCCATATACAGCGCAAACATTCAAATAATCAGAAACCTGAAATCAATCAATGGTACAACTGTCCGTTCTGTCctaaaatatttactaaaagAGAAACATATGCTAGGCATGTTCAGAGAAAGCATCACGTGTCAGACGAGAGTATAAAACAAGAAAAGAATACCGAAGCTTATTTGGATAATTGCAAAAATGAAGAAACCGGTGAGATAACTTGTAAAGAATGCCCTCTAGTCTTTTCTTCAATTAACTTCTTAAAACTTCATATGAGACGGAAGCATAATGCGTTGAGAGAAGATTTCAGATTGAAATGTCGGATTTGTAACTTGTCTTACGATAAAATTGAAAGCTTGAAGAGGCATGTGAGAAGAAAACACGACAAAGGATCTCACTGCGAAGTTTGTAATAAACAATTTGATACGCGAGAGATGTATCTCAACCATTCTCACGTGAAAGCTATCAAGGAGTGCAATATCTGTGGACTCATCTTCGCGTCACAAGGTGGCTTAGCGAAGCATTTGAGGTGCACACACAAAATAGATTCACCCAAAACAGTTTTCTGCAATCTGTGCAACGAAGGTTTCCACGACAAGCGACAGTTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCGTACACTTGTCGATACtgcaaaaaagtttttaaagctAAAGAAAGTTATCGACGGCATATATTATTTAAGCACCCTAATTCAAATCATGTTAATACACACATGCAAACATGCGAGCAATGTAGTGCGACTTTTAAGGATGAATTTGATCTGTGTcgtcatataaatatatttcacGGCCGCCCCGAAGATATGACGAAAGAAatgatagaaataaaaaaagaagatcaGGATATAAAGGACTGTTTCCAGTGTACCAAGTGTCCAGATACATATTTAACatgggaacagttaaaattacACTACGAAGCAACTCATCACAATATTGAAGAAACACAATGTCAAATATGTGGAGAGATTCTCCCAGGAAACGAATTACAGAAGCACATAAAGAATATGCACATGGATACTGAAATGCAGTGCAAATACTGTGAATTTAAGACGAATGTTAGAGTAAGTTTGACACAGCACACGTTAAGGCATAAAAATGCTGAGACAATTCATTGTGAATACACTGGTTGCAAGTATAAGACGTTTTACGATGGTGCTATGGAGAAGCATAAAAGAAAACATGCTGATTTGGGAGTCAAACTCCAATGTACGCAGTGCCCATTCCAGTCAATGAATAAATACATCTTGAAATATCATGAGGAAGCTCATGAAACAGGGAAAAAACGGTACATGTGTGACCAATGCGACTACGCAACGATTTTACCAGCCAATCTTGTGCAGCACAAATATAAGCATTCTACAGTAAAGAGGTTCAAATGTGACGTGTGTCCGTTCGCAACGAAATATAATACGTCACTGAGGTTTCATGTTAGGAAAAAACACTGTGATCTACCGACATTCAgttaa
- Protein Sequence
- MDLEVKVKIEKDELKRKDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIDDKMSVKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLVHEGFQNDDSQEPAVKIEPQNHDAVLLTFESVINEKKPPLVADSNEMFQISKNELPVATKQAPNHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHVCDYCGMAYEMKNSLVAHIKRKHGPDARPDDREERTCEICALVFKGMARLRMHMRRKHGSFQDSFKHVCEDCGLTYDKYRSLIVHIQRKHSNNQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSDESIKQEKNTEAYLDNCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPNSNHVNTHMQTCEQCSATFKDEFDLCRHINIFHGRPEDMTKEMIEIKKEDQDIKDCFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKNMHMDTEMQCKYCEFKTNVRVSLTQHTLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTVKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -