Lnic037116.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- ZFX
- Assembly
- GCA_963855955.1
- Location
- OY979691.1:5026951-5053105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 18 7.2 1.1 1 23 335 358 335 358 0.91 2 11 0.015 1.7 10.4 0.1 1 23 365 387 365 387 0.98 3 11 1.9 2.1e+02 3.9 0.9 1 10 391 400 391 414 0.78 4 11 0.83 92 5.0 2.3 1 23 421 443 421 443 0.82 5 11 1e-05 0.0011 20.5 1.1 2 23 448 470 447 470 0.93 6 11 1.7e-05 0.0019 19.7 1.0 1 23 476 498 476 498 0.97 7 11 0.0036 0.4 12.4 1.3 2 21 510 529 510 534 0.93 8 11 0.00031 0.035 15.8 1.3 1 23 542 565 542 565 0.94 9 11 0.0024 0.27 13.0 0.2 1 23 570 593 570 593 0.97 10 11 1e-05 0.0011 20.5 2.8 2 23 601 622 600 622 0.97 11 11 1e-07 1.1e-05 26.8 1.4 1 23 628 651 628 651 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAATATTACTTAGATGCTTTGGACGAAATTCCTCTGTGCAGTTTGACTACTGTAAGCCTGCAGGTCTGTTGGGAGTGCAAAGCCCTGCTACAGAAGAGCATAGCCTTTAGAGAACAAGTCCAGGACTCTTACCGGATACTGCAGACCTACACTCAAGAGAATCTCCACGAATGCCTCCTGTCAGACGTGAGCCGACCCCCTCGCCTGAAGGTCCACTGCGCCGAACCCACCAGTATTTCGCCCTCAGATGGGTATGAAGCACTATCAACGTACCCGGAAGTACCCATTATTTGTGTTAAGGATGAGCTTCAAGATTATTGGGATTGTGATAATGATGACACAAACATCTTAGAAGATGACACTGGCCCTCTATCAGACAGCTCAGAAACCACGAAACATTACGAGACGGAGGTACAAAGTATAATGTGCTCCATGAACCGGGACGAGAAGCGAGAGAGAGATGACAAGACTAAGAGTAAAAAAAGAGACAAGAAGATTAAGAGAGTTAAAGAGGATGAGAAGATAAAGAAAATGGATGAAATGCACAAGTTCACCGATGAATGGCAACGAAAAAGGGAGCTGGCTAATGCACGCATGCGAAGATACCGTCAGAAAAAACGTAGATCTAAACAATACTTGGATTCCATGGTCCAGAATGACCCTGAGACCGAGGagataagaaaaaaacaaattgaagaAGGCACAACAAAAAAGAGAATGCGCGAAGGAACGTTCGAGAAGATATCGCGAGAAGAAGCGTATTCATGCTttacacattATATACGTAGGATAGCCTTTACAAGAAGTGGTCATCGTATTAGTAGTTCAGCAGCTTCAATATCATCAGGATTGTGCCGGAATATAGCAGTTCTTCGTGGACTGcCGAAACCTACGAAAGAGCGAGACCAGAAGATCCTAACCATAGAGTTGACATATGAGGAAATGTtgttagaaagagacaaagAATCGGCAAAGGACGCGTATACGAGGGCGGAGCACAAGTGTGAGACCTGTCTCATTGGGTTTACTTACAGGAAGTCTTATTCAGCTCATGTGGCGGCTAAGCATTCGGCGGAATTAGGCGACTACATCTGTCCTATTTGCAAAACGATAATACCATCAGTGGAATCATTTACAGCTCATTATAAAAGGCATATGAGAAGATACGAATGCAGTATTTGCCACAAAAGAACATTGGACATCAAAGTGATGCAACAACATTACTACTCAACGCATGAGATATCACTCAAGGAATATAAATGTAATTTATGTGGGAAAATATCAAATTCCATAGACACCCACCGCTACCATAAAGACACGCACAAAGCAAGAATACAGTGCACAGAGTGTGACAAAACGTTCAGGCATAGAGCAGGACTCAAGAACCATAGACtGGCAGTGCACGAATATCGGAACACGTTTCCCTGCACGATATGTGACAAAGTGTTCCGATGGAAAACTAGTCTCAAGCGGCATTTAGAGAAACACGAAGTACAGGGCAAGTCATCATCAGCTGCAGCATATTGTTCCATGTGTAACGTGAGCTTCTCGTCCATATTTTCGTACCAGAGACACATGAAGAACAGCCTCAAACATGTCTCACAGGATCAGCTCaaattCATCTGTGACCATTGCGCCAAACGCTTCGCCGACAAGACGAAGCTAAGAGATCACATTGAGGAAAAACATTTATACAAGACTTATCAGTGTCAAATCTGTCTGAAGCCTTCTAAAAATCGCGTTGGTTTGGACCAGCATATACGTAATGTGCACAAAGGAAGGCCAAATAATAAGATGTGCCATCATTGCGGTAAAGGATTCCCTACCACGGTCCAGTTGGAGTCCCACATTCGTTCGCACACCGGCGAGAGACCATTCACATGCGAATACTGTCCGACAACATTCTCACAGCAATCCAACTTGTACAAACATATTAGACAGGTGCATCTCAACATAAAATCCAAACGCTATCCCATGTgcaagaagaaagaagaaaagctTCCAGACGTGCCCATATTAGACCATGTTCAACCCATAGACCCATATAGGCCGGTGCCCATGTTACACTATACTGCTGAAAAAGTGTTCGGAATGTGA
- Protein Sequence
- MQKYYLDALDEIPLCSLTTVSLQVCWECKALLQKSIAFREQVQDSYRILQTYTQENLHECLLSDVSRPPRLKVHCAEPTSISPSDGYEALSTYPEVPIICVKDELQDYWDCDNDDTNILEDDTGPLSDSSETTKHYETEVQSIMCSMNRDEKRERDDKTKSKKRDKKIKRVKEDEKIKKMDEMHKFTDEWQRKRELANARMRRYRQKKRRSKQYLDSMVQNDPETEEIRKKQIEEGTTKKRMREGTFEKISREEAYSCFTHYIRRIAFTRSGHRISSSAASISSGLCRNIAVLRGLPKPTKERDQKILTIELTYEEMLLERDKESAKDAYTRAEHKCETCLIGFTYRKSYSAHVAAKHSAELGDYICPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDIKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARIQCTECDKTFRHRAGLKNHRLAVHEYRNTFPCTICDKVFRWKTSLKRHLEKHEVQGKSSSAAAYCSMCNVSFSSIFSYQRHMKNSLKHVSQDQLKFICDHCAKRFADKTKLRDHIEEKHLYKTYQCQICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTTVQLESHIRSHTGERPFTCEYCPTTFSQQSNLYKHIRQVHLNIKSKRYPMCKKKEEKLPDVPILDHVQPIDPYRPVPMLHYTAEKVFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121715;
- 90% Identity
- -
- 80% Identity
- -