Basic Information

Insect: Luperina nickerlii
Gene Symbol: -
Assembly: GCA_963855955.1
Location: OY979681.1:7925865-7950120[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.33 36 6.3 0.4 6 20 12 26 6 28 0.86

2 13 0.031 3.4 9.5 0.4 2 20 34 52 33 54 0.93

3 13 0.78 86 5.1 0.5 1 12 207 218 207 227 0.83

4 13 0.59 66 5.5 0.0 1 19 363 381 363 381 0.97

5 13 0.00024 0.026 16.2 0.4 1 23 388 410 388 410 0.98

6 13 0.0004 0.044 15.4 0.6 1 23 424 446 424 446 0.97

7 13 0.0003 0.033 15.8 0.3 3 23 500 520 498 520 0.96

8 13 0.00087 0.096 14.4 2.3 1 23 536 558 536 558 0.98

9 13 1.6e-06 0.00018 23.0 4.5 1 23 564 586 564 586 0.98

10 13 0.00058 0.065 14.9 5.2 1 23 592 614 592 614 0.97

11 13 1e-05 0.0011 20.5 0.4 1 23 620 642 620 642 0.98

12 13 0.00048 0.053 15.2 1.1 1 23 646 668 646 668 0.98

13 13 0.00022 0.024 16.3 0.1 1 23 676 699 676 699 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.33	36	6.3	0.4	6	20	12	26	6	28	0.86
2	13	0.031	3.4	9.5	0.4	2	20	34	52	33	54	0.93
3	13	0.78	86	5.1	0.5	1	12	207	218	207	227	0.83
4	13	0.59	66	5.5	0.0	1	19	363	381	363	381	0.97
5	13	0.00024	0.026	16.2	0.4	1	23	388	410	388	410	0.98
6	13	0.0004	0.044	15.4	0.6	1	23	424	446	424	446	0.97
7	13	0.0003	0.033	15.8	0.3	3	23	500	520	498	520	0.96
8	13	0.00087	0.096	14.4	2.3	1	23	536	558	536	558	0.98
9	13	1.6e-06	0.00018	23.0	4.5	1	23	564	586	564	586	0.98
10	13	0.00058	0.065	14.9	5.2	1	23	592	614	592	614	0.97
11	13	1e-05	0.0011	20.5	0.4	1	23	620	642	620	642	0.98
12	13	0.00048	0.053	15.2	1.1	1	23	646	668	646	668	0.98
13	13	0.00022	0.024	16.3	0.1	1	23	676	699	676	699	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCCGTTGAATTGCCCCGTTTGTTGCAATGCGACTTTTAGTTCTAAACAATCTCTAATTGAGCACTTAACTAATGCTTTAGAGAATGTATATTGTCCTGTTTGTAATTACAAATGTACCTCATTACCACACCTTGTGGAGCATTTGGCTCAGGATAATTGTCAGCCAACTAACAATGTTCATACCATTATATTTGAGCGCCGATCAGATGAGGAGAACATTGAAAATTCTGAACTTAAAGTATTTCAGAGTGATTTTAATACTAATTATGGGAGTCACTATACAGCCAACCAAACTTACGAAACTGAGGGGGCTCTGAATGATGCCAATAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGAGAATTTAAACTGGTGAAGGAAAATGGGGAGAGTCGGTACATGATTGTCAGTCAGGATGATACCGACTTGAATGGAGGAAACACTATTGTAACCAAACAAAATGTTGATGGAACTATATCACTGACTACTGTTAAAGATATGAATCTGCCATCAGAGAACTTAATTACACCAGACAATGTACAAGAAACTCAGGAGGATAACCAGGAAGATTGTCAGGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCATTCTCATCTGTTATAGAGCACATACAGAACTACCATAATGACCAGGATGTTGTTGTCGAGgagccAATGGAAGAGGGACAGACTGAGTCGGTGCCTGAATACGAGCCAACGGAAAATGAAGAATCGTTGGTGACCACAGACAAGCAGACACCTCGGCGAGTCATCACTGACACAGGCGATATTGTAGAGGAGCCACTCATGTTTAAATCTGGGGATCAAATTATTTCGCCGGATCCATTGAGCTTGGAGCAAACACCAGAACCAATTAAAGCGGAGGGAAAAGGTCTGCGAGTCGTCACGAAACGTTTTCTGCAAGTAGACAAACTCTGCGACAGTGTCATCAAAGATACCATCCAGGCTGACGCAAAAGATAAAAGCGGTCCGTTTCACAAGGTAATCGTCAAAGAGGTGCCAAGGGACAACGGGTTTGCAATCAAAATGTACCAATGCTTAGCCTGTGATATATCTGTCTCCAATTTGGATGAGTTCAAAATAcatccatgtaaaatattaaaataCCCGTGTCTTTACTGTCCTGTGGCGTATGAAAACTCGAAATCTCTGTGTGCACACATGAAAGCACATAAAGTGAAAACAGagtcTGTCGTCCCTTTGCCAGTAAGATACGAATGTATTATATGCAGCACTGTTTTCCCAACCAACAAGTCTTTGAAACTACACAGACGGATGCACGATCCAGTCAAATCACGTCCCATAGATCCTCCGGTAGAAAACACAGATGGTTCAGAAGTGAACGAAGACAGATACCTATGCAGTTTCTGCAATAAAATGATCCCTATTGACTATAGAACTATCCATCAGAACTCACACAAAACCTCGCAGAAAATGAACTGCGGAATTTGTAATAAGAAGTTCACATCTATAGAGTATCTTGAAATGCATACGAATGTACATAATGTGGATAagGCGCCAATGAACAAACAAGATAAAAATCTACCATACAGCTGTTTGTATTGCAACAGAAGATTTGCGAGGCCGCACGAAAAAGTGAAACATGAAAGGATACATACAGGTGAGAAGCCCCATTCGTGCGAAATCTGTGGCAAGTCGTTCCGCGTCTCGTACTGCCTCACCCTGCACATGCGCACGCACACCGGTGCGCGCCCGTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAAGCACACAGCGTGTACAACCACCATCTGCTGACGCACTCGGAGGTACGCGCCTACAAGTGCCCGTTCTGTCCCAAAGCGTTCAAGACGTCCGTGCAACTCGCCGGGCACAAGAACTCGCATACCAAGCCGTTTTCGTGCCAACATTGTAATAGGCCATTTGCATCCTTATACGCGGTTCGGGTCCACACAGAAACACATGCGCGTCAGAACAACCTGAAATTCTCGTGCGAACTATGCGGCGCGAGCTACGCGAGGGCCTTTGCTCTTAAGGACCATATCAAGCAAGCGCATAATGAACAGGAACAAGCGCAGTCGGTTCCTGGCGATGAAGACTGGTTGACAAAACACAACCCGGACACGGATGAAATGCCGGCACTCAATAAAGATTTAACACATGAGATAGACCTGGGAATATCTACCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQPLNCPVCCNATFSSKQSLIEHLTNALENVYCPVCNYKCTSLPHLVEHLAQDNCQPTNNVHTIIFERRSDEENIENSELKVFQSDFNTNYGSHYTANQTYETEGALNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVSQDDTDLNGGNTIVTKQNVDGTISLTTVKDMNLPSENLITPDNVQETQEDNQEDCQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEEGQTESVPEYEPTENEESLVTTDKQTPRRVITDTGDIVEEPLMFKSGDQIISPDPLSLEQTPEPIKAEGKGLRVVTKRFLQVDKLCDSVIKDTIQADAKDKSGPFHKVIVKEVPRDNGFAIKMYQCLACDISVSNLDEFKIHPCKILKYPCLYCPVAYENSKSLCAHMKAHKVKTESVVPLPVRYECIICSTVFPTNKSLKLHRRMHDPVKSRPIDPPVENTDGSEVNEDRYLCSFCNKMIPIDYRTIHQNSHKTSQKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNKQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHNEQEQAQSVPGDEDWLTKHNPDTDEMPALNKDLTHEIDLGISTNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00173446;
90% Identity: iTF_00123609;
80% Identity: -